Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TGP    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S5' C5' S C sing 1.81 N N
2 S5' P S P sing 2.09 N N
3 N9 C4 N C sing 1.37 N Y
4 N9 C8 N C sing 1.38 N Y
5 N9 C1' N C sing 1.46 N N
6 C4 N3 C N sing 1.35 N N
7 C4 C5 C C doub 1.37 N Y
8 N3 C2 N C doub 1.32 N N
9 C2 N2 C N sing 1.37 N N
10 C2 N1 C N sing 1.41 N N
11 N2 H21 N H sing 0.99 N N
12 N2 H22 N H sing 0.99 N N
13 N1 C6 N C sing 1.4 N N
14 N1 H1 N H sing 1.02 N N
15 C6 O6 C O doub 1.22 N N
16 C6 C5 C C sing 1.44 N N
17 C5 N7 C N sing 1.36 N Y
18 N7 C8 N C doub 1.32 N Y
19 C8 H8 C H sing 1.08 N N
20 C2' C1' C C sing 1.52 N N
21 C2' C3' C C sing 1.51 N N
22 C2' H2' C H sing 1.1 N N
23 C2' H2'' C H sing 1.09 N N
24 C5' C4' C C sing 1.52 N N
25 C5' H5' C H sing 1.09 N N
26 C5' H5'' C H sing 1.09 N N
27 C4' O4' C O sing 1.44 N N
28 C4' C3' C C sing 1.52 N N
29 C4' H4' C H sing 1.1 N N
30 O4' C1' O C sing 1.44 N N
31 C1' H1' C H sing 1.1 N N
32 C3' O3' C O sing 1.43 N N
33 C3' H3' C H sing 1.09 N N
34 O3' HO3' O H sing 0.97 N N
35 OP3 P O P sing 1.62 N N
36 OP3 HOP3 O H sing 0.98 N N
37 P OP1 P O doub 1.51 N N
38 P OP2 P O sing 1.62 N N
39 OP2 HOP2 O H sing 0.98 N N