Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TC6    

Bonds between two atoms of the molecule

Total Number of Bonds: 97


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O doub 1.22 N N
2 C1 C2 C C sing 1.47 N N
3 C1 S1P C S sing 1.76 N N
4 C2 C3 C C doub 1.33 E N
5 C3 C4 C C sing 1.51 N N
6 C4 C5 C C sing 1.53 N N
7 C5 C6 C C sing 1.53 N N
8 N1A C2A N C doub 1.32 N Y
9 N1A C6A N C sing 1.33 N Y
10 O1A P1A O P doub 1.54 N N
11 P1A O2A P O sing 1.54 N N
12 P1A O3A P O sing 1.61 N N
13 P1A O5B P O sing 1.61 N N
14 C1B C2B C C sing 1.55 N N
15 C1B O4B C O sing 1.44 N N
16 C1B N9A C N sing 1.47 N N
17 S1P C2P S C sing 1.81 N N
18 C2A N3A C N sing 1.32 N Y
19 P2A O3A P O sing 1.61 N N
20 P2A O4A P O sing 1.55 N N
21 P2A O5A P O doub 1.54 N N
22 P2A O6A P O sing 1.61 N N
23 C2B O2B C O sing 1.43 N N
24 C2B C3B C C sing 1.55 N N
25 C2P C3P C C sing 1.53 N N
26 N3A C4A N C doub 1.33 N Y
27 C3B O3B C O sing 1.43 N N
28 C3B C4B C C sing 1.54 N N
29 O3B P3B O P sing 1.61 N N
30 P3B O7A P O sing 1.57 N N
31 P3B O8A P O sing 1.57 N N
32 P3B O9A P O doub 1.57 N N
33 C3P N4P C N sing 1.46 N N
34 C4A C5A C C sing 1.4 N Y
35 C4A N9A C N sing 1.37 N Y
36 C4B O4B C O sing 1.44 N N
37 C4B C5B C C sing 1.53 N N
38 N4P C5P N C sing 1.35 N N
39 C5A C6A C C doub 1.4 N Y
40 C5A N7A C N sing 1.36 N Y
41 C5B O5B C O sing 1.43 N N
42 C5P O5P C O doub 1.21 N N
43 C5P C6P C C sing 1.51 N N
44 C6A N6A C N sing 1.38 N N
45 O6A CCP O C sing 1.43 N N
46 C6P C7P C C sing 1.53 N N
47 N7A C8A N C doub 1.3 N Y
48 C7P N8P C N sing 1.46 N N
49 C8A N9A C N sing 1.36 N Y
50 N8P C9P N C sing 1.35 N N
51 C9P O9P C O doub 1.21 N N
52 C9P CAP C C sing 1.51 N N
53 CAP OAP C O sing 1.43 N N
54 CAP CBP C C sing 1.53 N N
55 CBP CCP C C sing 1.53 N N
56 CBP CDP C C sing 1.53 N N
57 CBP CEP C C sing 1.53 N N
58 C2 H2 C H sing 1.08 N N
59 C3 H3 C H sing 1.08 N N
60 C4 H4 C H sing 1.09 N N
61 C4 H4A C H sing 1.09 N N
62 C5 H5 C H sing 1.09 N N
63 C5 H5A C H sing 1.09 N N
64 C6 H6 C H sing 1.09 N N
65 C6 H6A C H sing 1.09 N N
66 C6 H6B C H sing 1.09 N N
67 C1B H1B C H sing 1.09 N N
68 C2A H2A C H sing 1.08 N N
69 C2B H2B C H sing 1.09 N N
70 O2B HO2B O H sing 0.97 N N
71 C2P H2P C H sing 1.09 N N
72 C2P H2PA C H sing 1.09 N N
73 C3B H3B C H sing 1.09 N N
74 C3P H3P C H sing 1.09 N N
75 C3P H3PA C H sing 1.09 N N
76 C4B H4B C H sing 1.09 N N
77 N4P HN4P N H sing 0.97 N N
78 C5B H5B C H sing 1.09 N N
79 C5B H5BA C H sing 1.09 N N
80 N6A HN6A N H sing 0.97 N N
81 N6A HN6B N H sing 0.97 N N
82 C6P H6P C H sing 1.09 N N
83 C6P H6PA C H sing 1.09 N N
84 C7P H7P C H sing 1.09 N N
85 C7P H7PA C H sing 1.09 N N
86 C8A H8A C H sing 1.08 N N
87 N8P HN8P N H sing 0.97 N N
88 CAP HAP C H sing 1.09 N N
89 OAP HOAP O H sing 0.97 N N
90 CCP HCP C H sing 1.09 N N
91 CCP HCPA C H sing 1.09 N N
92 CDP HDP C H sing 1.09 N N
93 CDP HDPA C H sing 1.09 N N
94 CDP HDPB C H sing 1.09 N N
95 CEP HEP C H sing 1.09 N N
96 CEP HEPA C H sing 1.09 N N
97 CEP HEPB C H sing 1.09 N N