Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : ST9    

Bonds between two atoms of the molecule

Total Number of Bonds: 139


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 C1 C C sing 1.51 N N
2 C1 O2 C O doub 1.21 N N
3 C1 S1P C S sing 1.71 N N
4 C3 C2 C C sing 1.53 N N
5 C2 H2 C H sing 1.09 N N
6 C2 H2A C H sing 1.09 N N
7 C4 C3 C C sing 1.53 N N
8 C3 H3 C H sing 1.09 N N
9 C3 H3A C H sing 1.09 N N
10 C5 C4 C C sing 1.53 N N
11 C4 H4 C H sing 1.09 N N
12 C4 H4A C H sing 1.09 N N
13 C6 C5 C C sing 1.53 N N
14 C5 H5 C H sing 1.09 N N
15 C5 H5A C H sing 1.09 N N
16 C6 C7 C C sing 1.53 N N
17 C6 H6 C H sing 1.09 N N
18 C6 H6A C H sing 1.09 N N
19 C7 C8 C C sing 1.53 N N
20 C7 H7 C H sing 1.09 N N
21 C7 H7A C H sing 1.09 N N
22 C8 C9 C C sing 1.53 N N
23 C8 H8 C H sing 1.09 N N
24 C8 H8A C H sing 1.09 N N
25 C9 C10 C C sing 1.53 N N
26 C9 H9 C H sing 1.09 N N
27 C9 H9A C H sing 1.09 N N
28 C10 C11 C C sing 1.53 N N
29 C10 H10 C H sing 1.09 N N
30 C10 H10A C H sing 1.09 N N
31 C11 C12 C C sing 1.53 N N
32 C11 H11 C H sing 1.09 N N
33 C11 H11A C H sing 1.09 N N
34 C13 C12 C C sing 1.53 N N
35 C12 H12 C H sing 1.09 N N
36 C12 H12A C H sing 1.09 N N
37 C13 C14 C C sing 1.53 N N
38 C13 H13 C H sing 1.09 N N
39 C13 H13A C H sing 1.09 N N
40 C14 C15 C C sing 1.53 N N
41 C14 H14 C H sing 1.09 N N
42 C14 H14A C H sing 1.09 N N
43 C15 C16 C C sing 1.53 N N
44 C15 H15 C H sing 1.09 N N
45 C15 H15A C H sing 1.09 N N
46 C16 C17 C C sing 1.53 N N
47 C16 H16 C H sing 1.09 N N
48 C16 H16A C H sing 1.09 N N
49 C18 C17 C C sing 1.53 N N
50 C17 H17 C H sing 1.09 N N
51 C17 H17A C H sing 1.09 N N
52 C18 H18 C H sing 1.09 N N
53 C18 H18A C H sing 1.09 N N
54 C18 H18B C H sing 1.09 N N
55 C6A N1A C N doub 1.33 N Y
56 N1A C2A N C sing 1.32 N Y
57 O1A P1A O P doub 1.48 N N
58 O3A P1A O P sing 1.61 N N
59 P1A O2A P O sing 1.61 N N
60 P1A O5B P O sing 1.61 N N
61 N9A C1B N C sing 1.46 N N
62 C2B C1B C C sing 1.55 N N
63 O4B C1B O C sing 1.44 N N
64 C1B H1B C H sing 1.09 N N
65 S1P C2P S C sing 1.81 N N
66 C2A N3A C N doub 1.32 N Y
67 C2A H2AA C H sing 1.08 N N
68 O2A HO2A O H sing 0.97 N N
69 O5A P2A O P doub 1.48 N N
70 P2A O4A P O sing 1.61 N N
71 P2A O6A P O sing 1.61 N N
72 P2A O3A P O sing 1.61 N N
73 C2B O2B C O sing 1.43 N N
74 C2B C3B C C sing 1.55 N N
75 C2B H2B C H sing 1.09 N N
76 O2B HO2B O H sing 0.97 N N
77 C2P C3P C C sing 1.53 N N
78 C2P H2P C H sing 1.09 N N
79 C2P H2PA C H sing 1.09 N N
80 C4A N3A C N sing 1.33 N Y
81 C4B C3B C C sing 1.54 N N
82 C3B O3B C O sing 1.43 N N
83 C3B H3B C H sing 1.09 N N
84 O3B P3B O P sing 1.61 N N
85 O9A P3B O P doub 1.48 N N
86 O7A P3B O P sing 1.61 N N
87 P3B O8A P O sing 1.61 N N
88 C3P N4P C N sing 1.46 N N
89 C3P H3P C H sing 1.09 N N
90 C3P H3PA C H sing 1.09 N N
91 C5A C4A C C doub 1.4 N Y
92 N9A C4A N C sing 1.37 N Y
93 O4A HO4A O H sing 0.97 N N
94 C5B C4B C C sing 1.53 N N
95 O4B C4B O C sing 1.44 N N
96 C4B H4B C H sing 1.09 N N
97 C5P N4P C N sing 1.35 N N
98 N4P HN4P N H sing 0.97 N N
99 N7A C5A N C sing 1.35 N Y
100 C6A C5A C C sing 1.41 N Y
101 O5B C5B O C sing 1.43 N N
102 C5B H5B C H sing 1.09 N N
103 C5B H5BA C H sing 1.09 N N
104 O5P C5P O C doub 1.21 N N
105 C5P C6P C C sing 1.51 N N
106 N6A C6A N C sing 1.38 N N
107 N6A HN6A N H sing 0.97 N N
108 N6A HN6B N H sing 0.97 N N
109 O6A CCP O C sing 1.43 N N
110 C7P C6P C C sing 1.53 N N
111 C6P H6P C H sing 1.09 N N
112 C6P H6PA C H sing 1.09 N N
113 N7A C8A N C doub 1.3 N Y
114 O7A HO7A O H sing 0.97 N N
115 C7P N8P C N sing 1.47 N N
116 C7P H7P C H sing 1.09 N N
117 C7P H7PA C H sing 1.09 N N
118 C8A N9A C N sing 1.36 N Y
119 C8A H8AA C H sing 1.08 N N
120 O8A HO8A O H sing 0.97 N N
121 N8P C9P N C sing 1.35 N N
122 N8P HN8P N H sing 0.97 N N
123 CAP C9P C C sing 1.51 N N
124 C9P O9P C O doub 1.21 N N
125 OAP CAP O C sing 1.43 N N
126 CAP CBP C C sing 1.53 N N
127 CAP HAP C H sing 1.09 N N
128 OAP HOAP O H sing 0.97 N N
129 CDP CBP C C sing 1.53 N N
130 CBP CCP C C sing 1.53 N N
131 CBP CEP C C sing 1.53 N N
132 CCP HCP C H sing 1.09 N N
133 CCP HCPA C H sing 1.09 N N
134 CDP HDP C H sing 1.09 N N
135 CDP HDPA C H sing 1.09 N N
136 CDP HDPB C H sing 1.09 N N
137 CEP HEP C H sing 1.09 N N
138 CEP HEPA C H sing 1.09 N N
139 CEP HEPB C H sing 1.09 N N