Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : SD5    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N01 C02 N C sing 1.39 N N
2 N01 HN01 N H sing 0.97 N N
3 N01 HN0A N H sing 0.97 N N
4 C03 C02 C C doub 1.39 N Y
5 C02 N07 C N sing 1.32 N Y
6 C03 C04 C C sing 1.38 N Y
7 C03 H03 C H sing 1.08 N N
8 C26 C04 C C sing 1.51 N N
9 C04 C05 C C doub 1.4 N Y
10 C05 C08 C C sing 1.48 N N
11 C05 C06 C C sing 1.39 N Y
12 N07 C06 N C doub 1.32 N Y
13 C06 H06 C H sing 1.08 N N
14 C09 C08 C C doub 1.39 N Y
15 C08 N13 C N sing 1.33 N Y
16 C09 C10 C C sing 1.39 N Y
17 C09 H09 C H sing 1.08 N N
18 N20 C10 N C sing 1.39 N N
19 C10 N11 C N doub 1.33 N Y
20 N11 C12 N C sing 1.32 N Y
21 N13 C12 N C doub 1.32 N Y
22 C12 N14 C N sing 1.38 N N
23 N14 C19 N C sing 1.47 N N
24 N14 C15 N C sing 1.47 N N
25 C15 C16 C C sing 1.53 N N
26 C15 H15 C H sing 1.09 N N
27 C15 H15A C H sing 1.09 N N
28 C16 O17 C O sing 1.43 N N
29 C16 H16 C H sing 1.09 N N
30 C16 H16A C H sing 1.09 N N
31 C18 O17 C O sing 1.43 N N
32 C19 C18 C C sing 1.53 N N
33 C18 H18 C H sing 1.09 N N
34 C18 H18A C H sing 1.09 N N
35 C19 H19 C H sing 1.09 N N
36 C19 H19A C H sing 1.09 N N
37 C25 N20 C N sing 1.47 N N
38 N20 C21 N C sing 1.47 N N
39 C21 C22 C C sing 1.53 N N
40 C21 H21 C H sing 1.09 N N
41 C21 H21A C H sing 1.09 N N
42 O23 C22 O C sing 1.43 N N
43 C22 H22 C H sing 1.09 N N
44 C22 H22A C H sing 1.09 N N
45 C24 O23 C O sing 1.43 N N
46 C25 C24 C C sing 1.53 N N
47 C24 H24 C H sing 1.09 N N
48 C24 H24A C H sing 1.09 N N
49 C25 H25 C H sing 1.09 N N
50 C25 H25A C H sing 1.09 N N
51 F27 C26 F C sing 1.4 N N
52 F29 C26 F C sing 1.4 N N
53 C26 F28 C F sing 1.4 N N