Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : S1P    

Bonds between two atoms of the molecule

Total Number of Bonds: 62


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 C1 C C sing 1.53 N N
2 O1 C1 O C sing 1.43 N N
3 C1 H1 C H sing 1.09 N N
4 C1 H1A C H sing 1.09 N N
5 O1 P22 O P sing 1.61 N N
6 C3 C2 C C sing 1.53 N N
7 N2 C2 N C sing 1.47 N N
8 C2 H2 C H sing 1.09 N N
9 N2 HN2 N H sing 1.01 N N
10 N2 HN2A N H sing 1.01 N N
11 C4 C3 C C sing 1.51 N N
12 C3 O3 C O sing 1.43 N N
13 C3 H3 C H sing 1.09 N N
14 O3 HO3 O H sing 0.97 N N
15 C5 C4 C C doub 1.31 N N
16 C4 H4 C H sing 1.08 E N
17 C6 C5 C C sing 1.51 N N
18 C5 H5 C H sing 1.08 N N
19 C7 C6 C C sing 1.53 N N
20 C6 H6 C H sing 1.09 N N
21 C6 H6A C H sing 1.09 N N
22 C8 C7 C C sing 1.53 N N
23 C7 H7 C H sing 1.09 N N
24 C7 H7A C H sing 1.09 N N
25 C8 C9 C C sing 1.53 N N
26 C8 H8 C H sing 1.09 N N
27 C8 H8A C H sing 1.09 N N
28 C10 C9 C C sing 1.53 N N
29 C9 H9 C H sing 1.09 N N
30 C9 H9A C H sing 1.09 N N
31 C11 C10 C C sing 1.53 N N
32 C10 H10 C H sing 1.09 N N
33 C10 H10A C H sing 1.09 N N
34 C12 C11 C C sing 1.53 N N
35 C11 H11 C H sing 1.09 N N
36 C11 H11A C H sing 1.09 N N
37 C12 C13 C C sing 1.53 N N
38 C12 H12 C H sing 1.09 N N
39 C12 H12A C H sing 1.09 N N
40 C14 C13 C C sing 1.53 N N
41 C13 H13 C H sing 1.09 N N
42 C13 H13A C H sing 1.09 N N
43 C14 C15 C C sing 1.53 N N
44 C14 H14 C H sing 1.09 N N
45 C14 H14A C H sing 1.09 N N
46 C15 C16 C C sing 1.53 N N
47 C15 H15 C H sing 1.09 N N
48 C15 H15A C H sing 1.09 N N
49 C16 C17 C C sing 1.53 N N
50 C16 H16 C H sing 1.09 N N
51 C16 H16A C H sing 1.09 N N
52 C17 C18 C C sing 1.53 N N
53 C17 H17 C H sing 1.09 N N
54 C17 H17A C H sing 1.09 N N
55 C18 H18 C H sing 1.09 N N
56 C18 H18A C H sing 1.09 N N
57 C18 H18B C H sing 1.09 N N
58 O25 P22 O P doub 1.48 N N
59 O24 P22 O P sing 1.61 N N
60 P22 O23 P O sing 1.61 N N
61 O23 HO23 O H sing 0.97 N N
62 O24 HO24 O H sing 0.97 N N