Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : PFD    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 F29 C28 F C sing 1.35 N N
2 C28 C26 C C doub 1.38 N Y
3 C28 C27 C C sing 1.39 N Y
4 C26 C24 C C sing 1.38 N Y
5 C26 H26 C H sing 1.08 N N
6 C24 C23 C C doub 1.39 N Y
7 C24 H24 C H sing 1.08 N N
8 C27 C25 C C doub 1.38 N Y
9 C27 H27 C H sing 1.08 N N
10 C25 C23 C C sing 1.39 N Y
11 C25 H25 C H sing 1.08 N N
12 C23 O22 C O sing 1.36 N N
13 O22 C20 O C sing 1.36 N N
14 C20 C16 C C doub 1.39 N Y
15 C20 C17 C C sing 1.39 N Y
16 C16 C12 C C sing 1.38 N Y
17 C16 H16 C H sing 1.08 N N
18 C12 C6 C C doub 1.39 N Y
19 C12 H12 C H sing 1.08 N N
20 C17 C13 C C doub 1.38 N Y
21 C17 H17 C H sing 1.08 N N
22 C13 C6 C C sing 1.39 N Y
23 C13 H13 C H sing 1.08 N N
24 C6 O2 C O sing 1.36 N N
25 O2 C1 O C sing 1.43 N N
26 C1 C5 C C sing 1.53 N N
27 C1 C4 C C sing 1.52 N N
28 C1 C3 C C sing 1.52 N N
29 C5 C11 C C sing 1.53 N N
30 C5 H51 C H sing 1.09 N N
31 C5 H52 C H sing 1.09 N N
32 C11 O15 C O sing 1.43 N N
33 C11 H111 C H sing 1.09 N N
34 C11 H112 C H sing 1.09 N N
35 O15 C19 O C sing 1.43 N N
36 C19 C21 C C sing 1.53 N N
37 C19 H191 C H sing 1.09 N N
38 C19 H192 C H sing 1.09 N N
39 C21 H211 C H sing 1.09 N N
40 C21 H212 C H sing 1.09 N N
41 C21 H213 C H sing 1.09 N N
42 C4 O10 C O doub 1.21 N N
43 C4 N9 C N sing 1.35 N N
44 N9 C14 N C sing 1.34 N N
45 N9 HN9 N H sing 0.97 N N
46 C14 O18 C O doub 1.22 N N
47 C14 N7 C N sing 1.34 N N
48 N7 C3 N C sing 1.35 N N
49 N7 HN7 N H sing 0.97 N N
50 C3 O8 C O doub 1.21 N N