Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MXA    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.32 N Y
2 N1 C8A N C sing 1.34 N Y
3 C2 N2 C N sing 1.38 N N
4 C2 N3 C N sing 1.33 N Y
5 N2 HN21 N H sing 0.97 N N
6 N2 HN22 N H sing 0.97 N N
7 N3 C4 N C doub 1.33 N Y
8 C4 N4 C N sing 1.38 N N
9 C4 C4A C C sing 1.42 N Y
10 N4 HN41 N H sing 0.97 N N
11 N4 HN42 N H sing 0.97 N N
12 C4A C5 C C sing 1.4 N Y
13 C4A C8A C C doub 1.42 N Y
14 C5 C5M C C sing 1.51 N N
15 C5 C6 C C doub 1.37 N Y
16 C5M H5M1 C H sing 1.09 N N
17 C5M H5M2 C H sing 1.09 N N
18 C5M H5M3 C H sing 1.09 N N
19 C6 C7 C C sing 1.39 N Y
20 C6 C9 C C sing 1.51 N N
21 C7 N8 C N doub 1.31 N Y
22 C7 H7 C H sing 1.08 N N
23 N8 C8A N C sing 1.33 N Y
24 C9 C1' C C sing 1.51 N N
25 C9 H91 C H sing 1.09 N N
26 C9 H92 C H sing 1.09 N N
27 C1' C2' C C doub 1.39 N Y
28 C1' C6' C C sing 1.38 N Y
29 C2' O2' C O sing 1.36 N N
30 C2' C3' C C sing 1.39 N Y
31 O2' C21 O C sing 1.43 N N
32 C21 H211 C H sing 1.09 N N
33 C21 H212 C H sing 1.09 N N
34 C21 H213 C H sing 1.09 N N
35 C3' C4' C C doub 1.38 N Y
36 C3' H3' C H sing 1.08 N N
37 C4' C5' C C sing 1.39 N Y
38 C4' H4' C H sing 1.08 N N
39 C5' O5' C O sing 1.36 N N
40 C5' C6' C C doub 1.39 N Y
41 O5' C51 O C sing 1.43 N N
42 C51 H511 C H sing 1.09 N N
43 C51 H512 C H sing 1.09 N N
44 C51 H513 C H sing 1.09 N N
45 C6' H6' C H sing 1.08 N N