Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MIT    

Bonds between two atoms of the molecule

Total Number of Bonds: 74


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S C8 S C sing 1.76 N N
2 S O1 S O doub 1.42 N N
3 S N1 S N sing 1.66 N N
4 O2 S O S doub 1.42 N N
5 C1 C2 C C sing 1.53 N N
6 C1 H1 C H sing 1.09 N N
7 C1 H1A C H sing 1.09 N N
8 C2 C10 C C sing 1.53 N N
9 C2 H2 C H sing 1.09 N N
10 C3 C2 C C sing 1.53 N N
11 C3 H3 C H sing 1.09 N N
12 C3 H3A C H sing 1.09 N N
13 C4 C3 C C sing 1.51 N N
14 C5 C4 C C sing 1.39 N Y
15 C5 H5 C H sing 1.08 N N
16 C6 C5 C C doub 1.38 N Y
17 C6 H6 C H sing 1.08 N N
18 C7 C6 C C sing 1.38 N Y
19 C7 C8 C C doub 1.38 N Y
20 C7 H7 C H sing 1.08 N N
21 C8 C9 C C sing 1.4 N Y
22 C9 C4 C C doub 1.38 N Y
23 C9 N C N sing 1.39 N N
24 C10 H10 C H sing 1.09 N N
25 C10 H10A C H sing 1.09 N N
26 C10 H10B C H sing 1.09 N N
27 N C1 N C sing 1.46 N N
28 N1 CA N C sing 1.46 N N
29 N1 H N H sing 0.97 N N
30 CA C C C sing 1.51 N N
31 CA CB C C sing 1.53 N N
32 CA HA C H sing 1.09 N N
33 C O C O doub 1.21 N N
34 C N2 C N sing 1.35 N N
35 CB CG C C sing 1.53 N N
36 CB HB2 C H sing 1.09 N N
37 CB HB3 C H sing 1.09 N N
38 CG CD C C sing 1.53 N N
39 CG HG2 C H sing 1.09 N N
40 CG HG3 C H sing 1.09 N N
41 CD NE C N sing 1.47 N N
42 CD HD2 C H sing 1.09 N N
43 CD HD3 C H sing 1.09 N N
44 NE CZ N C sing 1.37 N N
45 NE HE N H sing 0.97 N N
46 CZ NH1 C N sing 1.33 N N
47 CZ NH2 C N doub 1.33 N N
48 NH1 HH11 N H sing 0.97 N N
49 NH1 HH12 N H sing 0.97 N N
50 NH2 HH21 N H sing 0.97 N N
51 NH2 HH22 N H sing 0.97 N N
52 N2 C11 N C sing 1.47 N N
53 N2 C51 N C sing 1.47 N N
54 C11 C21 C C sing 1.53 N N
55 C11 C61 C C sing 1.51 N N
56 C11 H11 C H sing 1.09 N N
57 C21 C31 C C sing 1.53 N N
58 C21 H21 C H sing 1.09 N N
59 C21 H22 C H sing 1.09 N N
60 C31 C41 C C sing 1.53 N N
61 C31 C71 C C sing 1.53 N N
62 C31 H31 C H sing 1.09 N N
63 C41 C51 C C sing 1.53 N N
64 C41 H41 C H sing 1.09 N N
65 C41 H42 C H sing 1.09 N N
66 C51 H51 C H sing 1.09 N N
67 C51 H52 C H sing 1.09 N N
68 C61 O11 C O doub 1.21 N N
69 C61 O21 C O sing 1.34 N N
70 O21 HO21 O H sing 0.97 N N
71 C71 H71 C H sing 1.09 N N
72 C71 H72 C H sing 1.09 N N
73 C71 H73 C H sing 1.09 N N
74 HN N H N sing 1.01 N N