Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GTB    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 CA1 N C sing 1.47 N N
2 N1 HN11 N H sing 1.01 N N
3 N1 HN12 N H sing 1.01 N N
4 CA1 C1 C C sing 1.51 N N
5 CA1 CB1 C C sing 1.53 N N
6 CA1 HA1 C H sing 1.09 N N
7 C1 O11 C O doub 1.21 N N
8 C1 O12 C O sing 1.34 N N
9 CB1 CG1 C C sing 1.53 N N
10 CB1 HB11 C H sing 1.09 N N
11 CB1 HB12 C H sing 1.09 N N
12 CG1 CD1 C C sing 1.51 N N
13 CG1 HG11 C H sing 1.09 N N
14 CG1 HG12 C H sing 1.09 N N
15 CD1 OE1 C O doub 1.21 N N
16 CD1 N2 C N sing 1.35 N N
17 N2 CA2 N C sing 1.46 N N
18 N2 HN2 N H sing 0.97 N N
19 CA2 C2 C C sing 1.51 N N
20 CA2 CB2 C C sing 1.53 N N
21 CA2 HA2 C H sing 1.09 N N
22 C2 O2 C O doub 1.21 N N
23 C2 N3 C N sing 1.35 N N
24 CB2 SG2 C S sing 1.81 N N
25 CB2 HB21 C H sing 1.09 N N
26 CB2 HB22 C H sing 1.09 N N
27 SG2 C' S C sing 1.81 N N
28 N3 CA3 N C sing 1.47 N N
29 N3 HN3 N H sing 0.97 N N
30 CA3 C3 C C sing 1.51 N N
31 CA3 HA31 C H sing 1.09 N N
32 CA3 HA32 C H sing 1.09 N N
33 C3 O31 C O doub 1.21 N N
34 C3 O32 C O sing 1.34 N N
35 C' C1' C C sing 1.51 N N
36 C' H'1 C H sing 1.09 N N
37 C' H'2 C H sing 1.09 N N
38 C1' C2' C C doub 1.38 N Y
39 C1' C6' C C sing 1.38 N Y
40 C2' C3' C C sing 1.38 N Y
41 C2' H2' C H sing 1.08 N N
42 C3' C4' C C doub 1.38 N Y
43 C3' H3' C H sing 1.08 N N
44 C4' N41 C N sing 1.48 N N
45 C4' C5' C C sing 1.38 N Y
46 N41 O41 N O sing 1.22 N N
47 N41 O42 N O doub 1.22 N N
48 C5' C6' C C doub 1.38 N Y
49 C5' H5' C H sing 1.08 N N
50 C6' H6' C H sing 1.08 N N
51 O12 HO1 O H sing 0.97 N N
52 O32 HO3 O H sing 0.97 N N