Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GD9    

Bonds between two atoms of the molecule

Total Number of Bonds: 67


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 C15 O C sing 1.43 N N
2 O3 C16 O C sing 1.43 N N
3 C4 N2 C N doub 1.32 N Y
4 C4 N3 C N sing 1.39 N N
5 C4 C1 C C sing 1.41 N Y
6 C5 C6 C C doub 1.32 N Y
7 C5 C7 C C sing 1.51 N N
8 C5 S1 C S sing 1.75 N Y
9 C6 C2 C C sing 1.45 N Y
10 N1 C2 N C sing 1.35 N Y
11 N1 C3 N C doub 1.32 N Y
12 C7 N4 C N sing 1.47 N N
13 C8 C3 C C sing 1.48 N Y
14 C8 C18 C C doub 1.39 N Y
15 C8 C22 C C sing 1.41 N Y
16 N2 C3 N C sing 1.33 N Y
17 C9 C10 C C sing 1.53 N N
18 C9 N4 C N sing 1.47 N N
19 C10 N5 C N sing 1.47 N N
20 C11 C12 C C sing 1.53 N N
21 C11 N5 C N sing 1.47 N N
22 C12 N4 C N sing 1.47 N N
23 N3 C14 N C sing 1.47 N N
24 N3 C17 N C sing 1.47 N N
25 C13 S2 C S sing 1.81 N N
26 C14 C15 C C sing 1.53 N N
27 O2 S2 O S doub 1.42 N N
28 S2 O1 S O doub 1.42 N N
29 S2 N5 S N sing 1.66 N N
30 S1 C1 S C sing 1.76 N Y
31 C2 C1 C C doub 1.4 N Y
32 C18 C19 C C sing 1.39 N Y
33 C19 C20 C C doub 1.38 N Y
34 C20 C21 C C sing 1.39 N Y
35 C21 N6 C N sing 1.37 N Y
36 C21 C22 C C doub 1.41 N Y
37 N6 N7 N N sing 1.4 N Y
38 C22 C23 C C sing 1.41 N Y
39 C23 N7 C N doub 1.3 N Y
40 C16 C17 C C sing 1.53 N N
41 C6 H6 C H sing 1.08 N N
42 C7 H7 C H sing 1.09 N N
43 C7 H7A C H sing 1.09 N N
44 C9 H9 C H sing 1.09 N N
45 C9 H9A C H sing 1.09 N N
46 C10 H10 C H sing 1.09 N N
47 C10 H10A C H sing 1.09 N N
48 C11 H11 C H sing 1.09 N N
49 C11 H11A C H sing 1.09 N N
50 C12 H12 C H sing 1.09 N N
51 C12 H12A C H sing 1.09 N N
52 C13 H13 C H sing 1.09 N N
53 C13 H13A C H sing 1.09 N N
54 C13 H13B C H sing 1.09 N N
55 C14 H14 C H sing 1.09 N N
56 C14 H14A C H sing 1.09 N N
57 C15 H15 C H sing 1.09 N N
58 C15 H15A C H sing 1.09 N N
59 C18 H18 C H sing 1.08 N N
60 C19 H19 C H sing 1.08 N N
61 C20 H20 C H sing 1.08 N N
62 N6 HN6 N H sing 0.97 N N
63 C23 H23 C H sing 1.08 N N
64 C16 H16 C H sing 1.09 N N
65 C16 H16A C H sing 1.09 N N
66 C17 H17 C H sing 1.09 N N
67 C17 H17A C H sing 1.09 N N