Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : FDG    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O5' P O sing 1.61 N N
2 P OP1 P O doub 1.48 N N
3 P OP2 P O sing 1.61 N N
4 N1 C2 N C sing 1.36 N N
5 N1 C6 N C sing 1.35 N N
6 N1 HN1 N H sing 0.97 N N
7 C2 N2 C N sing 1.37 N N
8 C2 N3 C N doub 1.32 N N
9 N2 HN2 N H sing 0.97 N N
10 N2 HN2A N H sing 0.97 N N
11 N3 C4 N C sing 1.34 N N
12 C4 C5 C C doub 1.39 N N
13 C4 N9 C N sing 1.38 N N
14 C5 C6 C C sing 1.4 N N
15 C5 N7 C N sing 1.4 N N
16 C6 O6 C O doub 1.22 N N
17 N7 C8 N C sing 1.35 N N
18 N7 HN7 N H sing 0.97 N N
19 C8 O8 C O doub 1.22 N N
20 C8 N9 C N sing 1.35 N N
21 N9 C1' N C sing 1.47 N N
22 C1' C2' C C sing 1.54 N N
23 C1' O4' C O sing 1.44 N N
24 C1' H1' C H sing 1.09 N N
25 C2' F2' C F sing 1.4 N N
26 C2' C3' C C sing 1.55 N N
27 C2' H2' C H sing 1.09 N N
28 C3' O3' C O sing 1.43 N N
29 C3' C4' C C sing 1.55 N N
30 C3' H3' C H sing 1.09 N N
31 O3' HO3' O H sing 0.97 N N
32 C4' O4' C O sing 1.44 N N
33 C4' C5' C C sing 1.53 N N
34 C4' H4' C H sing 1.09 N N
35 C5' O5' C O sing 1.43 N N
36 C5' H5' C H sing 1.09 N N
37 C5' H5'A C H sing 1.09 N N
38 P OP3 P O sing 1.61 N N
39 OP3 HOP3 O H sing 0.97 N N
40 OP2 HOP2 O H sing 0.97 N N