Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : E55    

Bonds between two atoms of the molecule

Total Number of Bonds: 216


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAB CAT C C sing 1.53 N N
2 CAB HAB1 C H sing 1.09 N N
3 CAB HAB2 C H sing 1.09 N N
4 CAB HAB3 C H sing 1.09 N N
5 CAT CAZ C C sing 1.53 N N
6 CAT HAT1 C H sing 1.09 N N
7 CAT HAT2 C H sing 1.09 N N
8 CAZ CBF C C sing 1.53 N N
9 CAZ HAZ1 C H sing 1.09 N N
10 CAZ HAZ2 C H sing 1.09 N N
11 CBF CBJ C C sing 1.53 N N
12 CBF HBF1 C H sing 1.09 N N
13 CBF HBF2 C H sing 1.09 N N
14 CBJ CBM C C sing 1.53 N N
15 CBJ HBJ1 C H sing 1.09 N N
16 CBJ HBJ2 C H sing 1.09 N N
17 CBM CBP C C sing 1.53 N N
18 CBM HBM1 C H sing 1.09 N N
19 CBM HBM2 C H sing 1.09 N N
20 CBP CBR C C sing 1.53 N N
21 CBP HBP1 C H sing 1.09 N N
22 CBP HBP2 C H sing 1.09 N N
23 CBR CBU C C sing 1.53 N N
24 CBR HBR1 C H sing 1.09 N N
25 CBR HBR2 C H sing 1.09 N N
26 CBU CBY C C sing 1.53 N N
27 CBU HBU1 C H sing 1.09 N N
28 CBU HBU2 C H sing 1.09 N N
29 CBY CCD C C sing 1.53 N N
30 CBY HBY1 C H sing 1.09 N N
31 CBY HBY2 C H sing 1.09 N N
32 CCD CCV C C sing 1.51 N N
33 CCD HCD1 C H sing 1.09 N N
34 CCD HCD2 C H sing 1.09 N N
35 CCV CCH C C sing 1.51 N N
36 CCV OAG C O doub 1.21 N N
37 CCH CCX C C sing 1.51 N N
38 CCH HCH1 C H sing 1.09 N N
39 CCH HCH2 C H sing 1.09 N N
40 CCX N2 C N sing 1.35 N N
41 CCX OAI C O doub 1.21 N N
42 N2 C2 N C sing 1.47 N N
43 N2 HN2 N H sing 0.97 N N
44 C2 C1 C C sing 1.53 N N
45 C2 C3 C C sing 1.53 N N
46 C2 H2 C H sing 1.09 N N
47 C3 O3 C O sing 1.43 N N
48 C3 C4 C C sing 1.53 N N
49 C3 H3 C H sing 1.09 N N
50 C4 C5 C C sing 1.53 N N
51 C4 O4 C O sing 1.43 N N
52 C4 H4 C H sing 1.09 N N
53 O4 HO4 O H sing 0.97 N N
54 O3 CCB O C sing 1.43 N N
55 CCB CBX C C sing 1.53 N N
56 CCB HCB1 C H sing 1.09 N N
57 CCB HCB2 C H sing 1.09 N N
58 CBX CBT C C sing 1.53 N N
59 CBX HBX1 C H sing 1.09 N N
60 CBX HBX2 C H sing 1.09 N N
61 CBT CBQ C C sing 1.53 N N
62 CBT HBT1 C H sing 1.09 N N
63 CBT HBT2 C H sing 1.09 N N
64 CBQ CBN C C sing 1.53 N N
65 CBQ HBQ1 C H sing 1.09 N N
66 CBQ HBQ2 C H sing 1.09 N N
67 CBN CBK C C sing 1.53 N N
68 CBN HBN1 C H sing 1.09 N N
69 CBN HBN2 C H sing 1.09 N N
70 CBK CBG C C sing 1.53 N N
71 CBK HBK1 C H sing 1.09 N N
72 CBK HBK2 C H sing 1.09 N N
73 CBG CBA C C sing 1.53 N N
74 CBG HBG1 C H sing 1.09 N N
75 CBG HBG2 C H sing 1.09 N N
76 CBA CAU C C sing 1.53 N N
77 CBA HBA1 C H sing 1.09 N N
78 CBA HBA2 C H sing 1.09 N N
79 CAU CAC C C sing 1.53 N N
80 CAU HAU1 C H sing 1.09 N N
81 CAU HAU2 C H sing 1.09 N N
82 CAC HAC1 C H sing 1.09 N N
83 CAC HAC2 C H sing 1.09 N N
84 CAC HAC3 C H sing 1.09 N N
85 C1 O5 C O sing 1.43 N N
86 C1 O1 C O sing 1.43 N N
87 C1 H1 C H sing 1.09 N N
88 O1 PDJ O P sing 1.61 N N
89 PDJ OAM P O sing 1.61 N N
90 PDJ OAN P O sing 1.61 N N
91 PDJ OAJ P O doub 1.48 N N
92 OAM HAM O H sing 0.97 N N
93 OAN HAN O H sing 0.97 N N
94 O5 C5 O C sing 1.43 N N
95 C5 C6 C C sing 1.53 N N
96 C5 H5 C H sing 1.09 N N
97 C6 O6 C O sing 1.43 N N
98 C6 H61 C H sing 1.09 N N
99 C6 H62 C H sing 1.09 N N
100 O6 CDC O C sing 1.43 N N
101 CDC CDE C C sing 1.53 N N
102 CDC OCR C O sing 1.43 N N
103 CDC HDC C H sing 1.09 N N
104 OCR CDB O C sing 1.43 N N
105 CDB CCI C C sing 1.53 N N
106 CDB CDI C C sing 1.53 N N
107 CDB HDB C H sing 1.09 N N
108 CCI OCM C O sing 1.43 N N
109 CCI HCI1 C H sing 1.09 N N
110 CCI HCI2 C H sing 1.09 N N
111 OCM CAE O C sing 1.43 N N
112 CAE HAE1 C H sing 1.09 N N
113 CAE HAE2 C H sing 1.09 N N
114 CAE HAE3 C H sing 1.09 N N
115 CDI OCU C O sing 1.43 N N
116 CDI CDH C C sing 1.53 N N
117 CDI HDI C H sing 1.09 N N
118 OCU PDK O P sing 1.61 N N
119 PDK OAO P O sing 1.61 N N
120 PDK OAP P O sing 1.61 N N
121 PDK OAK P O doub 1.48 N N
122 OAO HAO O H sing 0.97 N N
123 OAP HAP O H sing 0.97 N N
124 CDH CDE C C sing 1.53 N N
125 CDH OCP C O sing 1.43 N N
126 CDH HDH C H sing 1.09 N N
127 OCP CCC O C sing 1.43 N N
128 CCC CCG C C sing 1.53 N N
129 CCC HCC1 C H sing 1.09 N N
130 CCC HCC2 C H sing 1.09 N N
131 CCG CCY C C sing 1.53 N N
132 CCG HCG1 C H sing 1.09 N N
133 CCG HCG2 C H sing 1.09 N N
134 CCY CCF C C sing 1.53 N N
135 CCY OCN C O sing 1.43 N N
136 CCY HCY C H sing 1.09 N N
137 OCN CAF O C sing 1.43 N N
138 CAF HAF1 C H sing 1.09 N N
139 CAF HAF2 C H sing 1.09 N N
140 CAF HAF3 C H sing 1.09 N N
141 CCF CCA C C sing 1.53 N N
142 CCF HCF1 C H sing 1.09 N N
143 CCF HCF2 C H sing 1.09 N N
144 CCA CBW C C sing 1.53 N N
145 CCA HCA1 C H sing 1.09 N N
146 CCA HCA2 C H sing 1.09 N N
147 CBW CBH C C sing 1.53 N N
148 CBW HBW1 C H sing 1.09 N N
149 CBW HBW2 C H sing 1.09 N N
150 CBH CBB C C sing 1.53 N N
151 CBH HBH1 C H sing 1.09 N N
152 CBH HBH2 C H sing 1.09 N N
153 CBB CAV C C sing 1.53 N N
154 CBB HBB1 C H sing 1.09 N N
155 CBB HBB2 C H sing 1.09 N N
156 CAV CAD C C sing 1.53 N N
157 CAV HAV1 C H sing 1.09 N N
158 CAV HAV2 C H sing 1.09 N N
159 CAD HAD1 C H sing 1.09 N N
160 CAD HAD2 C H sing 1.09 N N
161 CAD HAD3 C H sing 1.09 N N
162 CDE NCK C N sing 1.46 N N
163 CDE HDE C H sing 1.09 N N
164 NCK CCW N C sing 1.35 N N
165 NCK HCK N H sing 0.97 N N
166 CCW CCE C C sing 1.51 N N
167 CCW OAH C O doub 1.21 N N
168 CCE CBZ C C sing 1.53 N N
169 CCE HCE1 C H sing 1.09 N N
170 CCE HCE2 C H sing 1.09 N N
171 CBZ CBV C C sing 1.53 N N
172 CBZ HBZ1 C H sing 1.09 N N
173 CBZ HBZ2 C H sing 1.09 N N
174 CBV CBS C C sing 1.53 N N
175 CBV HBV1 C H sing 1.09 N N
176 CBV HBV2 C H sing 1.09 N N
177 CBS CBO C C sing 1.53 N N
178 CBS HBS1 C H sing 1.09 N N
179 CBS HBS2 C H sing 1.09 N N
180 CBO CBL C C sing 1.53 N N
181 CBO HBO1 C H sing 1.09 N N
182 CBO HBO2 C H sing 1.09 N N
183 CBL CBI C C sing 1.53 N N
184 CBL HBL1 C H sing 1.09 N N
185 CBL HBL2 C H sing 1.09 N N
186 CBI CBD C C sing 1.53 N N
187 CBI HBI1 C H sing 1.09 N N
188 CBI HBI2 C H sing 1.09 N N
189 CBD CAX C C sing 1.53 N N
190 CBD HBD1 C H sing 1.09 N N
191 CBD HBD2 C H sing 1.09 N N
192 CAX CAR C C sing 1.51 N N
193 CAX HAX1 C H sing 1.09 N N
194 CAX HAX2 C H sing 1.09 N N
195 CAR CAQ C C doub 1.31 Z N
196 CAR HAR C H sing 1.08 N N
197 CAQ CAW C C sing 1.51 N N
198 CAQ HAQ C H sing 1.08 N N
199 CAW CBC C C sing 1.53 N N
200 CAW HAW1 C H sing 1.09 N N
201 CAW HAW2 C H sing 1.09 N N
202 CBC CBE C C sing 1.53 N N
203 CBC HBC1 C H sing 1.09 N N
204 CBC HBC2 C H sing 1.09 N N
205 CBE CAY C C sing 1.53 N N
206 CBE HBE1 C H sing 1.09 N N
207 CBE HBE2 C H sing 1.09 N N
208 CAY CAS C C sing 1.53 N N
209 CAY HAY1 C H sing 1.09 N N
210 CAY HAY2 C H sing 1.09 N N
211 CAS CAA C C sing 1.53 N N
212 CAS HAS1 C H sing 1.09 N N
213 CAS HAS2 C H sing 1.09 N N
214 CAA HAA1 C H sing 1.09 N N
215 CAA HAA2 C H sing 1.09 N N
216 CAA HAA3 C H sing 1.09 N N