Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DPG    

Bonds between two atoms of the molecule

Total Number of Bonds: 154


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C1 O1 C O sing 1.43 N N
3 C1 H11 C H sing 1.09 N N
4 C1 H12 C H sing 1.09 N N
5 C2 C3 C C sing 1.53 N N
6 C2 O2 C O sing 1.43 N N
7 C2 H2 C H sing 1.09 N N
8 C3 O3 C O sing 1.43 N N
9 C3 H31 C H sing 1.09 N N
10 C3 H32 C H sing 1.09 N N
11 C4 C5 C C sing 1.53 N N
12 C4 O6 C O sing 1.43 N N
13 C4 H41 C H sing 1.09 N N
14 C4 H42 C H sing 1.09 N N
15 C5 C6 C C sing 1.53 N N
16 C5 O7 C O sing 1.43 N N
17 C5 H5 C H sing 1.09 N N
18 C6 O8 C O sing 1.43 N N
19 C6 H61 C H sing 1.09 N N
20 C6 H62 C H sing 1.09 N N
21 C11 C12 C C sing 1.53 N N
22 C11 O1 C O sing 1.43 N N
23 C11 H111 C H sing 1.09 N N
24 C11 H112 C H sing 1.09 N N
25 C12 C13 C C sing 1.53 N N
26 C12 H121 C H sing 1.09 N N
27 C12 H122 C H sing 1.09 N N
28 C13 C14 C C sing 1.53 N N
29 C13 C15 C C sing 1.53 N N
30 C13 H13 C H sing 1.09 N N
31 C14 H141 C H sing 1.09 N N
32 C14 H142 C H sing 1.09 N N
33 C14 H143 C H sing 1.09 N N
34 C15 C16 C C sing 1.53 N N
35 C15 H151 C H sing 1.09 N N
36 C15 H152 C H sing 1.09 N N
37 C16 C17 C C sing 1.53 N N
38 C16 H161 C H sing 1.09 N N
39 C16 H162 C H sing 1.09 N N
40 C17 C18 C C sing 1.53 N N
41 C17 H171 C H sing 1.09 N N
42 C17 H172 C H sing 1.09 N N
43 C18 C19 C C sing 1.53 N N
44 C18 C20 C C sing 1.53 N N
45 C18 H18 C H sing 1.09 N N
46 C19 H191 C H sing 1.09 N N
47 C19 H192 C H sing 1.09 N N
48 C19 H193 C H sing 1.09 N N
49 C20 C21 C C sing 1.53 N N
50 C20 H201 C H sing 1.09 N N
51 C20 H202 C H sing 1.09 N N
52 C21 C22 C C sing 1.53 N N
53 C21 H211 C H sing 1.09 N N
54 C21 H212 C H sing 1.09 N N
55 C22 C23 C C sing 1.53 N N
56 C22 H221 C H sing 1.09 N N
57 C22 H222 C H sing 1.09 N N
58 C23 C24 C C sing 1.53 N N
59 C23 C25 C C sing 1.53 N N
60 C23 H23 C H sing 1.09 N N
61 C24 H241 C H sing 1.09 N N
62 C24 H242 C H sing 1.09 N N
63 C24 H243 C H sing 1.09 N N
64 C25 C26 C C sing 1.53 N N
65 C25 H251 C H sing 1.09 N N
66 C25 H252 C H sing 1.09 N N
67 C26 C27 C C sing 1.53 N N
68 C26 H261 C H sing 1.09 N N
69 C26 H262 C H sing 1.09 N N
70 C27 C28 C C sing 1.53 N N
71 C27 H271 C H sing 1.09 N N
72 C27 H272 C H sing 1.09 N N
73 C28 C29 C C sing 1.53 N N
74 C28 C30 C C sing 1.53 N N
75 C28 H28 C H sing 1.09 N N
76 C29 H291 C H sing 1.09 N N
77 C29 H292 C H sing 1.09 N N
78 C29 H293 C H sing 1.09 N N
79 C30 H301 C H sing 1.09 N N
80 C30 H302 C H sing 1.09 N N
81 C30 H303 C H sing 1.09 N N
82 C41 C42 C C sing 1.53 N N
83 C41 O2 C O sing 1.43 N N
84 C41 H411 C H sing 1.09 N N
85 C41 H412 C H sing 1.09 N N
86 C42 C43 C C sing 1.53 N N
87 C42 H421 C H sing 1.09 N N
88 C42 H422 C H sing 1.09 N N
89 C43 C44 C C sing 1.53 N N
90 C43 C45 C C sing 1.53 N N
91 C43 H43 C H sing 1.09 N N
92 C44 H441 C H sing 1.09 N N
93 C44 H442 C H sing 1.09 N N
94 C44 H443 C H sing 1.09 N N
95 C45 C46 C C sing 1.53 N N
96 C45 H451 C H sing 1.09 N N
97 C45 H452 C H sing 1.09 N N
98 C46 C47 C C sing 1.53 N N
99 C46 H461 C H sing 1.09 N N
100 C46 H462 C H sing 1.09 N N
101 C47 C48 C C sing 1.53 N N
102 C47 H471 C H sing 1.09 N N
103 C47 H472 C H sing 1.09 N N
104 C48 C49 C C sing 1.53 N N
105 C48 C50 C C sing 1.53 N N
106 C48 H48 C H sing 1.09 N N
107 C49 H491 C H sing 1.09 N N
108 C49 H492 C H sing 1.09 N N
109 C49 H493 C H sing 1.09 N N
110 C50 C51 C C sing 1.53 N N
111 C50 H501 C H sing 1.09 N N
112 C50 H502 C H sing 1.09 N N
113 C51 C52 C C sing 1.53 N N
114 C51 H511 C H sing 1.09 N N
115 C51 H512 C H sing 1.09 N N
116 C52 C53 C C sing 1.53 N N
117 C52 H521 C H sing 1.09 N N
118 C52 H522 C H sing 1.09 N N
119 C53 C54 C C sing 1.53 N N
120 C53 C55 C C sing 1.53 N N
121 C53 H53 C H sing 1.09 N N
122 C54 H541 C H sing 1.09 N N
123 C54 H542 C H sing 1.09 N N
124 C54 H543 C H sing 1.09 N N
125 C55 C56 C C sing 1.53 N N
126 C55 H551 C H sing 1.09 N N
127 C55 H552 C H sing 1.09 N N
128 C56 C57 C C sing 1.53 N N
129 C56 H561 C H sing 1.09 N N
130 C56 H562 C H sing 1.09 N N
131 C57 C58 C C sing 1.53 N N
132 C57 H571 C H sing 1.09 N N
133 C57 H572 C H sing 1.09 N N
134 C58 C59 C C sing 1.53 N N
135 C58 C60 C C sing 1.53 N N
136 C58 H58 C H sing 1.09 N N
137 C59 H591 C H sing 1.09 N N
138 C59 H592 C H sing 1.09 N N
139 C59 H593 C H sing 1.09 N N
140 C60 H601 C H sing 1.09 N N
141 C60 H602 C H sing 1.09 N N
142 C60 H603 C H sing 1.09 N N
143 O3 P1 O P sing 1.61 N N
144 O4 P1 O P doub 1.48 N N
145 O5 P1 O P sing 1.61 N N
146 O5 HO5 O H sing 0.97 N N
147 O6 P1 O P sing 1.61 N N
148 O7 HO7 O H sing 0.97 N N
149 O8 P2 O P sing 1.61 N N
150 O9 P2 O P doub 1.48 N N
151 O10 P2 O P sing 1.61 N N
152 O10 HO0 O H sing 0.97 N N
153 O11 P2 O P sing 1.61 N N
154 O11 HO1 O H sing 0.97 N N