Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : C5G    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.34 N Y
2 N1 C6 N C sing 1.36 N Y
3 N1 C1D N C sing 1.46 N N
4 C2 N3 C N sing 1.33 N Y
5 C2 O2 C O doub 1.22 N N
6 N3 C4 N C doub 1.33 N Y
7 C4 C5 C C sing 1.41 N Y
8 C4 N4 C N sing 1.38 N N
9 C5 C6 C C doub 1.35 N Y
10 C5 H5 C H sing 1.08 N N
11 C6 H6 C H sing 1.08 N N
12 N4 H41 N H sing 0.97 N N
13 N4 H42 N H sing 0.97 N N
14 C1D C2D C C sing 1.54 N N
15 C1D O4D C O sing 1.44 N N
16 C1D H1D C H sing 1.09 N N
17 C2D O2D C O sing 1.43 N N
18 C2D C3D C C sing 1.55 N N
19 C2D H2D C H sing 1.09 N N
20 O2D HO'2 O H sing 0.97 N N
21 C3D C4D C C sing 1.55 N N
22 C3D O3D C O sing 1.43 N N
23 C3D H3D C H sing 1.09 N N
24 C4D O4D C O sing 1.44 N N
25 C4D C5D C C sing 1.53 N N
26 C4D H4D C H sing 1.09 N N
27 O3D H3T O H sing 0.97 N N
28 C5D O5D C O sing 1.43 N N
29 C5D H5'1 C H sing 1.09 N N
30 C5D H5'2 C H sing 1.09 N N
31 O5D PA O P sing 1.61 N N
32 PA O1A P O doub 1.48 N N
33 PA O2A P O sing 1.61 N N
34 PA O3A P O sing 1.61 N N
35 O2A HO2A O H sing 0.97 N N
36 O3A PB O P sing 1.61 N N
37 PB O1B P O doub 1.48 N N
38 PB O2B P O sing 1.61 N N
39 PB O1' P O sing 1.61 N N
40 O2B HO2B O H sing 0.97 N N
41 O1' C1' O C sing 1.43 N N
42 C1' C2' C C sing 1.53 N N
43 C1' O5' C O sing 1.43 N N
44 C1' H1' C H sing 1.09 N N
45 C2' O2' C O sing 1.43 N N
46 C2' C3' C C sing 1.53 N N
47 C2' H2' C H sing 1.09 N N
48 O2' HOD O H sing 0.97 N N
49 C3' O3' C O sing 1.43 N N
50 C3' C4' C C sing 1.53 N N
51 C3' H3' C H sing 1.09 N N
52 O3' HO'3 O H sing 0.97 N N
53 C4' O4' C O sing 1.43 N N
54 C4' C5' C C sing 1.53 N N
55 C4' H4' C H sing 1.09 N N
56 O4' HO'4 O H sing 0.97 N N
57 C5' C6' C C sing 1.53 N N
58 C5' O5' C O sing 1.43 N N
59 C5' H5' C H sing 1.09 N N
60 C6' O6' C O sing 1.43 N N
61 C6' H6'1 C H sing 1.09 N N
62 C6' H6'2 C H sing 1.09 N N
63 O6' HO'6 O H sing 0.97 N N