Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : B4P    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PA O1A P O doub 1.48 N N
2 PA O2A P O sing 1.61 N N
3 PA O3A P O sing 1.61 N N
4 PA O5E P O sing 1.61 N N
5 O2A HOA2 O H sing 0.97 N N
6 O3A PB O P sing 1.61 N N
7 PB O1B P O doub 1.48 N N
8 PB O2B P O sing 1.61 N N
9 PB O3B P O sing 1.61 N N
10 O2B HOB2 O H sing 0.97 N N
11 O3B PG O P sing 1.61 N N
12 PG O1G P O doub 1.48 N N
13 PG O2G P O sing 1.61 N N
14 PG O3G P O sing 1.61 N N
15 O2G HOG2 O H sing 0.97 N N
16 O3G PD O P sing 1.61 N N
17 PD O1D P O doub 1.48 N N
18 PD O2D P O sing 1.61 N N
19 PD O5F P O sing 1.61 N N
20 O2D HOD2 O H sing 0.97 N N
21 O5E C5E O C sing 1.43 N N
22 C5E C4E C C sing 1.53 N N
23 C5E H51A C H sing 1.09 N N
24 C5E H52A C H sing 1.09 N N
25 C4E O4E C O sing 1.44 N N
26 C4E C3E C C sing 1.54 N N
27 C4E H4E C H sing 1.09 N N
28 O4E C1E O C sing 1.45 N N
29 C3E O3E C O sing 1.43 N N
30 C3E C2E C C sing 1.55 N N
31 C3E H3E C H sing 1.09 N N
32 O3E HO3A O H sing 0.97 N N
33 C2E O2E C O sing 1.43 N N
34 C2E C1E C C sing 1.54 N N
35 C2E H2E C H sing 1.09 N N
36 O2E HO2A O H sing 0.97 N N
37 C1E N9A C N sing 1.46 N N
38 C1E H1E C H sing 1.09 N N
39 N9A C8A N C sing 1.36 N Y
40 N9A C4A N C sing 1.37 N Y
41 C8A N7A C N doub 1.3 N Y
42 C8A H8A C H sing 1.08 N N
43 N7A C5A N C sing 1.35 N Y
44 C5A C6A C C sing 1.4 N Y
45 C5A C4A C C doub 1.41 N Y
46 C6A N6A C N sing 1.38 N N
47 C6A N1A C N doub 1.33 N Y
48 N6A H61A N H sing 0.97 N N
49 N6A H62A N H sing 0.97 N N
50 N1A C2A N C sing 1.32 N Y
51 C2A N3A C N doub 1.32 N Y
52 C2A H2A C H sing 1.08 N N
53 N3A C4A N C sing 1.33 N Y
54 O5F C5F O C sing 1.43 N N
55 C5F C4F C C sing 1.53 N N
56 C5F H51B C H sing 1.09 N N
57 C5F H52B C H sing 1.09 N N
58 C4F O4F C O sing 1.44 N N
59 C4F C3F C C sing 1.54 N N
60 C4F H4F C H sing 1.09 N N
61 O4F C1F O C sing 1.44 N N
62 C3F O3F C O sing 1.43 N N
63 C3F C2F C C sing 1.55 N N
64 C3F H3F C H sing 1.09 N N
65 O3F HO3B O H sing 0.97 N N
66 C2F O2F C O sing 1.43 N N
67 C2F C1F C C sing 1.55 N N
68 C2F H2F C H sing 1.09 N N
69 O2F HO2B O H sing 0.97 N N
70 C1F N9B C N sing 1.47 N N
71 C1F H1F C H sing 1.09 N N
72 N9B C8B N C sing 1.36 N Y
73 N9B C4B N C sing 1.37 N Y
74 C8B N7B C N doub 1.3 N Y
75 C8B H8B C H sing 1.08 N N
76 N7B C5B N C sing 1.36 N Y
77 C5B C6B C C sing 1.41 N Y
78 C5B C4B C C doub 1.41 N Y
79 C6B N6B C N sing 1.38 N N
80 C6B N1B C N doub 1.33 N Y
81 N6B H61B N H sing 0.97 N N
82 N6B H62B N H sing 0.97 N N
83 N1B C2B N C sing 1.32 N Y
84 C2B N3B C N doub 1.32 N Y
85 C2B H2B C H sing 1.08 N N
86 N3B C4B N C sing 1.33 N Y