Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : AV9    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.36 N Y
2 C1 C6 C C sing 1.4 N Y
3 C1 O34 C O sing 1.36 N N
4 C2 C3 C C sing 1.41 N Y
5 C3 C4 C C sing 1.42 N Y
6 C3 N7 C N doub 1.34 N Y
7 C4 C5 C C sing 1.4 N Y
8 C4 C10 C C doub 1.41 N Y
9 C5 C6 C C doub 1.37 N Y
10 C6 O33 C O sing 1.36 N N
11 N7 C8 N C sing 1.31 N Y
12 C8 C9 C C doub 1.39 N Y
13 C9 C10 C C sing 1.38 N Y
14 C10 O11 C O sing 1.36 N N
15 O11 C12 O C sing 1.36 N N
16 C12 C13 C C sing 1.39 N Y
17 C12 C17 C C doub 1.39 N Y
18 C13 C11 C C doub 1.38 N Y
19 C15 C16 C C doub 1.39 N Y
20 C15 N28 C N sing 1.4 N N
21 C15 C11 C C sing 1.39 N Y
22 C16 C17 C C sing 1.38 N Y
23 O25 C30 O C sing 1.34 N N
24 O25 N21 O N sing 1.21 N N
25 N28 C35 N C sing 1.35 N N
26 O33 C49 O C sing 1.43 N N
27 O34 C53 O C sing 1.43 N N
28 C11 CL4 C CL sing 1.74 N N
29 C35 O36 C O doub 1.22 N N
30 C35 N37 C N sing 1.33 N N
31 N37 C38 N C doub 1.34 N N
32 C38 C43 C C sing 1.41 N N
33 C38 N21 C N sing 1.35 N N
34 C40 C30 C C sing 1.51 N N
35 C43 C30 C C doub 1.36 N N
36 C2 H2 C H sing 1.08 N N
37 C5 H5 C H sing 1.08 N N
38 C8 H8 C H sing 1.08 N N
39 C9 H9 C H sing 1.08 N N
40 C13 H13 C H sing 1.08 N N
41 C17 H17 C H sing 1.08 N N
42 C16 H16 C H sing 1.08 N N
43 N28 H28 N H sing 0.97 N N
44 N21 H21 N H sing 0.97 N N
45 C49 H491 C H sing 1.09 N N
46 C49 H492 C H sing 1.09 N N
47 C49 H493 C H sing 1.09 N N
48 C53 H531 C H sing 1.09 N N
49 C53 H532 C H sing 1.09 N N
50 C53 H533 C H sing 1.09 N N
51 C43 H43 C H sing 1.08 N N
52 C40 H401 C H sing 1.09 N N
53 C40 H402 C H sing 1.09 N N
54 C40 H403 C H sing 1.09 N N