Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 9ZA    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N6 C6 N C sing 1.38 N N
2 C6 N1 C N doub 1.33 N Y
3 C6 C5 C C sing 1.41 N Y
4 N1 C2 N C sing 1.32 N Y
5 C5 N7 C N sing 1.35 N Y
6 C5 C4 C C doub 1.41 N Y
7 C2 N3 C N doub 1.32 N Y
8 N7 C8 N C doub 1.3 N Y
9 C4 N3 C N sing 1.33 N Y
10 C4 N9 C N sing 1.37 N Y
11 C8 N9 C N sing 1.36 N Y
12 N9 C1' N C sing 1.47 N N
13 C1' C2' C C sing 1.55 N N
14 C1' O4' C O sing 1.45 N N
15 O2' C2' O C sing 1.43 N N
16 C2' C3' C C sing 1.55 N N
17 O4' C4' O C sing 1.44 N N
18 C3' C4' C C sing 1.55 N N
19 C3' O3' C O sing 1.43 N N
20 C4' C5' C C sing 1.53 N N
21 C5' O5' C O sing 1.43 N N
22 O5' P O P sing 1.61 N N
23 O10 C7 O C doub 1.21 N N
24 O2P P O P doub 1.48 N N
25 N2 P N P sing 1.68 N N
26 N2 C3 N C sing 1.47 N N
27 P O3P P O sing 1.61 N N
28 C7 C3 C C sing 1.51 N N
29 C7 O11 C O sing 1.34 N N
30 C9 C3 C C sing 1.53 N N
31 C12 O11 C O sing 1.45 N N
32 O3P H1 O H sing 0.97 N N
33 C5' H2 C H sing 1.09 N N
34 C5' H3 C H sing 1.09 N N
35 C4' H4 C H sing 1.09 N N
36 C3' H5 C H sing 1.09 N N
37 O3' H6 O H sing 0.97 N N
38 C2' H7 C H sing 1.09 N N
39 O2' H8 O H sing 0.97 N N
40 C1' H9 C H sing 1.09 N N
41 C8 H10 C H sing 1.08 N N
42 C2 H11 C H sing 1.08 N N
43 N6 H12 N H sing 0.97 N N
44 N6 H13 N H sing 0.97 N N
45 N2 H14 N H sing 1.01 N N
46 C3 H15 C H sing 1.09 N N
47 C9 H16 C H sing 1.09 N N
48 C9 H17 C H sing 1.09 N N
49 C9 H18 C H sing 1.09 N N
50 C12 H19 C H sing 1.09 N N
51 C12 H20 C H sing 1.09 N N
52 C12 H21 C H sing 1.09 N N