Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 9YP    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OAB CAV O C doub 1.22 N N
2 OAH PBB O P doub 1.48 N N
3 NAQ CAI N C doub 1.3 N Y
4 NAQ CAX N C sing 1.36 N Y
5 OAD PBB O P sing 1.61 N N
6 CAV CAX C C sing 1.41 N N
7 CAV NAR C N sing 1.35 N N
8 PBB CAO P C sing 1.82 N N
9 PBB OAG P O sing 1.61 N N
10 CAI NAZ C N sing 1.36 N Y
11 CAX CAW C C doub 1.4 N Y
12 CAO OAT C O sing 1.43 N N
13 NAR CAU N C sing 1.36 N N
14 NAZ CAW N C sing 1.37 N Y
15 NAZ CAP N C sing 1.47 N N
16 CAW CAJ C N sing 1.34 N N
17 CAN OAT C O sing 1.43 N N
18 CAN CAY C C sing 1.53 N N
19 CAU CAJ C N doub 1.31 N N
20 CAU NAA C N sing 1.37 N N
21 CAP CAY C C sing 1.53 N N
22 CAY CAM C C sing 1.53 N N
23 CAM OAS C O sing 1.43 N N
24 OAS CAK O C sing 1.43 N N
25 CAK CAL C C sing 1.53 N N
26 OAF PBA O P doub 1.48 N N
27 CAL PBA C P sing 1.82 N N
28 OAE PBA O P sing 1.61 N N
29 PBA OAC P O sing 1.61 N N
30 OAE H1 O H sing 0.97 N N
31 OAC H2 O H sing 0.97 N N
32 CAL H3 C H sing 1.09 N N
33 CAL H4 C H sing 1.09 N N
34 CAK H5 C H sing 1.09 N N
35 CAK H6 C H sing 1.09 N N
36 CAM H7 C H sing 1.09 N N
37 CAM H8 C H sing 1.09 N N
38 CAY H9 C H sing 1.09 N N
39 CAN H10 C H sing 1.09 N N
40 CAN H11 C H sing 1.09 N N
41 CAO H12 C H sing 1.09 N N
42 CAO H13 C H sing 1.09 N N
43 OAG H14 O H sing 0.97 N N
44 OAD H15 O H sing 0.97 N N
45 CAP H16 C H sing 1.09 N N
46 CAP H17 C H sing 1.09 N N
47 NAA H18 N H sing 0.97 N N
48 NAA H19 N H sing 0.97 N N
49 NAR H20 N H sing 0.97 N N
50 CAI H21 C H sing 1.08 N N