Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5VS    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O6 C5 O C doub 1.22 N N
2 C3 C2 C C sing 1.53 N N
3 N4 C5 N C sing 1.35 N N
4 N4 C2 N C sing 1.46 N N
5 C5 C7 C C sing 1.48 N N
6 C2 C1 C C sing 1.53 N N
7 C2 N13 C N sing 1.46 N N
8 C20 C19 C C doub 1.38 N Y
9 C20 C15 C C sing 1.38 N Y
10 C19 C18 C C sing 1.38 N Y
11 C7 C8 C C doub 1.39 N Y
12 C7 C12 C C sing 1.41 N Y
13 N13 C14 N C sing 1.47 N N
14 N13 C12 N C sing 1.39 N N
15 C8 C9 C C sing 1.37 N Y
16 C15 C14 C C sing 1.51 N N
17 C15 C16 C C doub 1.38 N Y
18 C18 C17 C C doub 1.38 N Y
19 C12 C11 C C doub 1.39 N Y
20 C16 C17 C C sing 1.38 N Y
21 C9 C10 C C doub 1.39 N Y
22 C11 C10 C C sing 1.39 N Y
23 C10 N21 C N sing 1.4 N N
24 C23 C22 C C doub 1.39 N Y
25 C23 C24 C C sing 1.39 N Y
26 N21 C22 N C sing 1.39 N N
27 N21 C30 N C sing 1.35 N N
28 C22 C27 C C sing 1.4 N Y
29 C24 C25 C C doub 1.38 N Y
30 O31 C30 O C doub 1.22 N N
31 C30 N28 C N sing 1.35 N N
32 C27 N28 C N sing 1.39 N N
33 C27 N26 C N doub 1.32 N Y
34 C25 N26 C N sing 1.32 N Y
35 C8 H1 C H sing 1.08 N N
36 C17 H2 C H sing 1.08 N N
37 C20 H3 C H sing 1.08 N N
38 C24 H4 C H sing 1.08 N N
39 C1 H5 C H sing 1.09 N N
40 C1 H6 C H sing 1.09 N N
41 C1 H7 C H sing 1.09 N N
42 C3 H8 C H sing 1.09 N N
43 C3 H9 C H sing 1.09 N N
44 C3 H10 C H sing 1.09 N N
45 N4 H11 N H sing 0.97 N N
46 C9 H12 C H sing 1.08 N N
47 C11 H13 C H sing 1.08 N N
48 C14 H14 C H sing 1.09 N N
49 C14 H15 C H sing 1.09 N N
50 C16 H16 C H sing 1.08 N N
51 C18 H17 C H sing 1.08 N N
52 C19 H18 C H sing 1.08 N N
53 C23 H19 C H sing 1.08 N N
54 C25 H20 C H sing 1.08 N N
55 N28 H21 N H sing 0.97 N N