Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2AM    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O1P P O doub 1.48 N N
2 P O2P P O sing 1.61 N N
3 P O3P P O sing 1.61 N N
4 P O2' P O sing 1.61 N N
5 O2P HOP2 O H sing 0.97 N N
6 O3P HOP3 O H sing 0.97 N N
7 C5' O5' C O sing 1.43 N N
8 C5' C4' C C sing 1.53 N N
9 C5' H5'1 C H sing 1.09 N N
10 C5' H5'2 C H sing 1.09 N N
11 O5' HO5' O H sing 0.97 N N
12 C4' O4' C O sing 1.44 N N
13 C4' C3' C C sing 1.54 N N
14 C4' H4' C H sing 1.09 N N
15 O4' C1' O C sing 1.45 N N
16 C3' O3' C O sing 1.43 N N
17 C3' C2' C C sing 1.55 N N
18 C3' H3' C H sing 1.09 N N
19 O3' HO3' O H sing 0.97 N N
20 C2' O2' C O sing 1.43 N N
21 C2' C1' C C sing 1.54 N N
22 C2' H2' C H sing 1.09 N N
23 C1' N9 C N sing 1.46 N N
24 C1' H1' C H sing 1.09 N N
25 N9 C8 N C sing 1.36 N Y
26 N9 C4 N C sing 1.37 N Y
27 C8 N7 C N doub 1.3 N Y
28 C8 H8 C H sing 1.08 N N
29 N7 C5 N C sing 1.36 N Y
30 C5 C6 C C sing 1.4 N Y
31 C5 C4 C C doub 1.41 N Y
32 C6 N6 C N sing 1.38 N N
33 C6 N1 C N doub 1.33 N Y
34 N6 HN61 N H sing 0.97 N N
35 N6 HN62 N H sing 0.97 N N
36 N1 C2 N C sing 1.32 N Y
37 C2 N3 C N doub 1.32 N Y
38 C2 H2 C H sing 1.08 N N
39 N3 C4 N C sing 1.33 N Y