Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 20Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 44


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 C2 O C doub 1.21 N N
2 C1 C2 C C sing 1.51 N N
3 C2 N4 C N sing 1.35 N N
4 N20 C19 N C sing 1.4 N N
5 C10 C9 C C doub 1.38 N Y
6 C10 C5 C C sing 1.39 N Y
7 N4 C5 N C sing 1.39 N N
8 C9 C8 C C sing 1.4 N Y
9 C5 C6 C C doub 1.39 N Y
10 O12 C11 O C doub 1.22 N N
11 C8 C11 C C sing 1.48 N N
12 C8 C7 C C doub 1.4 N Y
13 C6 C7 C C sing 1.38 N Y
14 C11 N13 C N sing 1.35 N N
15 C19 C18 C C doub 1.39 N Y
16 C19 C14 C C sing 1.4 N Y
17 C18 C17 C C sing 1.38 N Y
18 N13 C14 N C sing 1.4 N N
19 C14 C15 C C doub 1.38 N Y
20 C17 C16 C C doub 1.4 N Y
21 C15 C16 C C sing 1.4 N Y
22 C16 C21 C C sing 1.48 N N
23 C21 C22 C C doub 1.35 N Y
24 C21 S25 C S sing 1.76 N Y
25 C22 C23 C C sing 1.38 N Y
26 S25 C24 S C sing 1.76 N Y
27 C23 C24 C C doub 1.34 N Y
28 C6 H1 C H sing 1.08 N N
29 C7 H2 C H sing 1.08 N N
30 C9 H3 C H sing 1.08 N N
31 C10 H4 C H sing 1.08 N N
32 C1 H5 C H sing 1.09 N N
33 C1 H6 C H sing 1.09 N N
34 C1 H7 C H sing 1.09 N N
35 N4 H8 N H sing 0.97 N N
36 N13 H9 N H sing 0.97 N N
37 C15 H10 C H sing 1.08 N N
38 C17 H11 C H sing 1.08 N N
39 C18 H12 C H sing 1.08 N N
40 N20 H13 N H sing 0.97 N N
41 N20 H14 N H sing 0.97 N N
42 C22 H15 C H sing 1.08 N N
43 C23 H16 C H sing 1.08 N N
44 C24 H17 C H sing 1.08 N N