Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 0GM    

Bonds between two atoms of the molecule

Total Number of Bonds: 128


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N CA1 N C sing 1.47 N N
2 C1 N1 C N sing 1.36 N N
3 C1 O1 C O doub 1.21 N N
4 N2 CA3 N C sing 1.48 N N
5 C3 N3 C N sing 1.36 N N
6 C3 CA3 C C sing 1.51 N N
7 O3 C3 O C doub 1.21 N N
8 CB CA1 C C sing 1.53 N N
9 CD CG C C sing 1.51 N N
10 CD N4 C N sing 1.36 N N
11 CG CB C C sing 1.53 N N
12 CA1 C1 C C sing 1.51 N N
13 CA3 CB4 C C sing 1.53 N N
14 CB4 CG2 C C sing 1.53 N N
15 OE1 CD O C doub 1.21 N N
16 CG2 CD3 C C sing 1.53 N N
17 CG2 CD4 C C sing 1.53 N N
18 C N C N sing 1.35 N N
19 C CA C C sing 1.51 N N
20 O C O C doub 1.21 N N
21 N1 CA2 N C sing 1.48 N N
22 C2 N2 C N sing 1.37 N N
23 O2 C2 O C doub 1.21 N N
24 N4 CB5 N C sing 1.48 N N
25 CA CB1 C C sing 1.53 N N
26 OH CH O C sing 1.43 N N
27 CM C2 C C sing 1.51 N N
28 CM CH C C sing 1.53 N N
29 CZ CE1 C C doub 1.38 N Y
30 CZ CE2 C C sing 1.38 N Y
31 C11 C12 C C sing 1.42 N Y
32 C11 C5A C C sing 1.41 N Y
33 C12 C8A C C sing 1.41 N Y
34 C13 C5B C C sing 1.41 N Y
35 C13 C14 C C sing 1.42 N Y
36 C14 C8B C C sing 1.41 N Y
37 C1A C12 C C doub 1.4 N Y
38 C1A CB1 C C sing 1.51 N N
39 C1B C14 C C doub 1.41 N Y
40 C1B CB2 C C sing 1.51 N N
41 C2A C1A C C sing 1.36 N Y
42 C2B C1B C C sing 1.36 N Y
43 C3A C2A C C doub 1.39 N Y
44 C3A C4A C C sing 1.36 N Y
45 C3B C2B C C doub 1.39 N Y
46 C3B C4B C C sing 1.36 N Y
47 C4A C11 C C doub 1.41 N Y
48 C4B C13 C C doub 1.4 N Y
49 C5A C6A C C doub 1.36 N Y
50 C5B C6B C C doub 1.36 N Y
51 C6A C7A C C sing 1.39 N Y
52 C6B C7B C C sing 1.39 N Y
53 C8A C7A C C doub 1.36 N Y
54 C8B C7B C C doub 1.36 N Y
55 CA2 CH C C sing 1.53 N N
56 CA2 CB3 C C sing 1.53 N N
57 CA4 N3 C N sing 1.48 N N
58 CB2 CA C C sing 1.53 N N
59 CB5 CE1 C C sing 1.51 N N
60 CD5 CG3 C C doub 1.38 N Y
61 CD6 CG3 C C sing 1.38 N Y
62 CE1 CD5 C C sing 1.38 N Y
63 CE2 CD6 C C doub 1.38 N Y
64 CG1 CB3 C C sing 1.53 N N
65 CG1 CD1 C C sing 1.53 N N
66 CG1 CD2 C C sing 1.53 N N
67 CG3 CA4 C C sing 1.51 N N
68 N HN N H sing 0.97 N N
69 N2 HN2 N H sing 0.97 N N
70 CB HB C H sing 1.09 N N
71 CB HBA C H sing 1.09 N N
72 CG HG C H sing 1.09 N N
73 CG HGA C H sing 1.09 N N
74 CA1 HA1 C H sing 1.09 N N
75 CA3 HA3 C H sing 1.09 N N
76 CB4 HB4 C H sing 1.09 N N
77 CB4 HB4A C H sing 1.09 N N
78 CD3 HD3 C H sing 1.09 N N
79 CD3 HD3A C H sing 1.09 N N
80 CD3 H13 C H sing 1.09 N N
81 CD4 HD4 C H sing 1.09 N N
82 CD4 HD4A C H sing 1.09 N N
83 CD4 HD4B C H sing 1.09 N N
84 CG2 H17 C H sing 1.09 N N
85 N1 HN1 N H sing 0.97 N N
86 N3 HN3 N H sing 0.97 N N
87 N4 HN4 N H sing 0.97 N N
88 CA HA C H sing 1.09 N N
89 CH HH C H sing 1.09 N N
90 OH HOH O H sing 0.97 N N
91 CM HM C H sing 1.09 N N
92 CM HMA C H sing 1.09 N N
93 CZ HZ C H sing 1.08 N N
94 C2A H2A C H sing 1.08 N N
95 C2B H2B C H sing 1.08 N N
96 C3A H3A C H sing 1.08 N N
97 C3B H3B C H sing 1.08 N N
98 C4A H4A C H sing 1.08 N N
99 C4B H4B C H sing 1.08 N N
100 C5A H5A C H sing 1.08 N N
101 C5B H5B C H sing 1.08 N N
102 C6A H6A C H sing 1.08 N N
103 C6B H6B C H sing 1.08 N N
104 C7A H7A C H sing 1.08 N N
105 C7B H7B C H sing 1.08 N N
106 C8A H8A C H sing 1.08 N N
107 C8B H8B C H sing 1.08 N N
108 CA2 HA2 C H sing 1.09 N N
109 CA4 HA4 C H sing 1.09 N N
110 CA4 HA4A C H sing 1.09 N N
111 CB1 HB1 C H sing 1.09 N N
112 CB1 HB1A C H sing 1.09 N N
113 CB2 HB2 C H sing 1.09 N N
114 CB2 HB2A C H sing 1.09 N N
115 CB3 HB3 C H sing 1.09 N N
116 CB3 HB3A C H sing 1.09 N N
117 CB5 HB5 C H sing 1.09 N N
118 CB5 HB5A C H sing 1.09 N N
119 CD1 HD1 C H sing 1.09 N N
120 CD1 HD1A C H sing 1.09 N N
121 CD1 HD1B C H sing 1.09 N N
122 CD2 HD2 C H sing 1.09 N N
123 CD2 HD2A C H sing 1.09 N N
124 CD2 HD2B C H sing 1.09 N N
125 CD5 HD5 C H sing 1.08 N N
126 CD6 HD6 C H sing 1.08 N N
127 CE2 HE2 C H sing 1.08 N N
128 CG1 HG1 C H sing 1.09 N N