Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ZK5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 N N N 0 -1.735 -0.003 -4.558
2 C3 C C3 N N N 0 -0.401 0.263 -5.228
3 C4 C C4 N N N 0 0.785 -0.276 -4.557
4 C5 C C5 N N N 0 0.74 -0.567 -3.257
5 C6 C C6 N N N 0 1.994 -1.138 -2.618
6 C7 C C7 N N N 0 2.293 -0.353 -1.339
7 C1 C C1 N N N 0 -1.596 0.39 -3.088
8 C8 C C8 S N N 0 1.063 -0.393 -0.428
9 C9 C C9 R N N 0 -0.091 0.354 -1.108
10 C10 C C10 S N N 0 -0.461 -0.377 -2.405
11 C11 C C11 S N N 0 -1.322 0.435 -0.211
12 C12 C C12 N N N 0 -0.988 1.045 1.159
13 C16 C C16 N N N 0 2.113 0.241 3.176
14 C13 C C13 S N N 0 0.098 0.187 1.776
15 C14 C C14 S N N 0 1.36 0.334 0.884
16 C15 C C15 N N N 0 2.449 -0.298 1.759
17 C17 C C17 R N N 0 0.593 0.599 3.158
18 C18 C C18 N N N 0 -0.349 -1.275 1.802
19 C19 C C19 N N N 0 -0.985 -1.765 -2.033
20 C20 C C20 N N N 0 -0.135 -0.162 4.234
21 C21 C C21 N N N 0 -1.428 0.373 4.792
22 F9 F F9 N N N 0 0.329 1.651 -1.422
23 O1 O O1 N N N 0 -0.32 0.89 -6.264
24 O2 O O2 N N N 0 -1.846 -0.88 -0.021
25 O3 O O3 N N N 0 0.413 2.005 3.336
26 O4 O O4 N N N 0 0.316 -1.202 4.65
27 O5 O O5 N N N 0 -1.922 -0.52 5.792
28 H2C1 H 1H2C N N N 0 -2.513 0.596 -5.03
29 H2C2 H 2H2C N N N 0 -1.983 -1.062 -4.636
30 H4 H H4 N N N 0 1.695 -0.438 -5.115
31 H6C1 H 1H6C N N N 0 2.831 -1.045 -3.309
32 H6C2 H 2H6C N N N 0 1.833 -2.188 -2.373
33 H7C1 H 1H7C N N N 0 2.524 0.681 -1.592
34 H7C2 H 2H7C N N N 0 3.142 -0.803 -0.825
35 H1C1 H 1H1C N N N 0 -1.389 1.458 -3.025
36 H1C2 H 2H1C N N N 0 -2.533 0.179 -2.574
37 H8 H H8 N N N 0 0.775 -1.428 -0.239
38 H11 H H11 N N N 0 -2.078 1.051 -0.699
39 H121 H 1H12 N N N 0 -1.874 1.036 1.795
40 H122 H 2H12 N N N 0 -0.629 2.066 1.034
41 H14 H H14 N N N 0 1.585 1.383 0.694
42 H151 H 1H15 N N N 0 2.38 -1.385 1.735
43 H152 H 2H15 N N N 0 3.438 0.034 1.445
44 H161 H 1H16 N N N 0 2.307 -0.527 3.925
45 H162 H 2H16 N N N 0 2.708 1.129 3.389
46 H181 H 1H18 N N N 0 -0.368 -1.668 0.785
47 H182 H 2H18 N N N 0 0.348 -1.858 2.403
48 H183 H 3H18 N N N 0 -1.346 -1.342 2.236
49 H191 H 1H19 N N N 0 -0.947 -2.414 -2.908
50 H192 H 2H19 N N N 0 -0.366 -2.187 -1.24
51 H193 H 3H19 N N N 0 -2.015 -1.684 -1.685
52 H211 H 1H21 N N N 0 -1.254 1.353 5.235
53 H212 H 2H21 N N N 0 -2.161 0.461 3.99
54 H2 H H2 N N N 0 -2.642 -0.789 0.52
55 H3 H H3 N N N 0 0.781 2.226 4.203
56 H5 H H5 N N N 0 -2.748 -0.141 6.122