Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Z9H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4 O O4 N N N 0 -0.725 -2.644 -0.308
2 C7 C C7 N N N 0 -0.592 -3.698 0.648
3 C4 C C4 R N N 0 -0.187 -1.394 0.128
4 C5 C C5 R N N 0 -1.054 -0.25 -0.405
5 O5 O O5 N N N 0 -0.482 1.0 -0.017
6 C6 C C6 N N N 0 -2.466 -0.367 0.173
7 O6 O O6 N N N 0 -3.306 0.628 -0.415
8 S1 S S1 N N N 0 -4.741 0.604 0.09
9 O7 O O7 N N N 0 -4.737 1.204 1.489
10 O8 O O8 N N N 0 -5.471 1.505 -0.731
11 O12 O O12 N N N 0 -5.09 -0.766 0.242
12 C3 C C3 S N N 0 1.239 -1.235 -0.407
13 O3 O O3 N N N 0 2.073 -2.257 0.144
14 C8 C C8 N N N 0 3.149 -2.651 -0.709
15 C2 C C2 R N N 0 1.776 0.14 0.001
16 O2 O O2 N N N 0 3.079 0.328 -0.555
17 S2 S S2 N N N 0 4.024 1.12 0.337
18 O9 O O9 N N N 0 3.244 2.145 0.938
19 O10 O O10 N N N 0 4.462 0.196 1.463
20 O11 O O11 N N N 0 5.184 1.383 -0.441
21 C1 C C1 S N N 0 0.833 1.224 -0.528
22 O1 O O1 N N Y 0 0.804 1.176 -1.956
23 HO1 H HO1 N N Y 0 0.225 1.837 -2.36
24 H11 H H11 N N N 0 -1.033 -3.388 1.595
25 H12 H H12 N N N 0 -1.106 -4.587 0.282
26 H13 H H13 N N N 0 0.464 -3.924 0.795
27 H4 H H4 N N N 0 -0.174 -1.363 1.218
28 H5 H H5 N N N 0 -1.101 -0.306 -1.493
29 H61 H H61 N N N 0 -2.867 -1.357 -0.045
30 H62 H H62 N N N 0 -2.429 -0.22 1.253
31 HO7 H HO7 N N N 0 -5.609 1.236 1.905
32 H3 H H3 N N N 0 1.232 -1.318 -1.494
33 H6 H H6 N N N 0 3.735 -3.429 -0.219
34 H7 H H7 N N N 0 2.748 -3.035 -1.647
35 H63 H H63 N N N 0 3.787 -1.791 -0.911
36 H2 H H2 N N N 0 1.831 0.202 1.087
37 HO10 H HO10 N N N 0 5.07 0.605 2.094
38 H1 H H1 N N N 0 1.188 2.203 -0.204