Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YKC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.974 -3.042 -0.602
2 C2 C C2 N Y N 0 -0.329 -3.332 -0.969
3 C3 C C3 N Y N 0 -1.229 -2.308 -1.2
4 C4 C C4 N Y N 0 1.382 -1.732 -0.464
5 C5 C C5 N Y N 0 0.478 -0.692 -0.695
6 C6 C C6 N Y N 0 -0.831 -0.995 -1.065
7 C7 C C7 R N N 0 -1.565 0.311 -1.244
8 C8 C C8 N Y N 0 0.642 0.779 -0.623
9 C9 C C9 N Y N 0 -0.561 1.398 -0.944
10 C10 C C10 N Y N 0 -0.659 2.773 -0.945
11 C11 C C11 N Y N 0 0.44 3.554 -0.625
12 C12 C C12 N Y N 0 1.644 2.961 -0.303
13 C13 C C13 N Y N 0 1.76 1.572 -0.298
14 C14 C C14 N Y N 0 3.047 0.935 0.048
15 N15 N N15 N Y N 0 3.179 -0.233 0.632
16 N16 N N16 N Y N 0 4.282 1.472 -0.198
17 C17 C C17 N Y N 0 5.216 0.572 0.274
18 C18 C C18 N Y N 0 4.483 -0.511 0.8
19 C19 C C19 N Y N 0 5.196 -1.585 1.35
20 C20 C C20 N Y N 0 6.562 -1.535 1.356
21 N21 N N21 N Y N 0 7.217 -0.5 0.857
22 C22 C C22 N Y N 0 6.6 0.534 0.32
23 N23 N N23 N N N 0 -2.689 0.391 -0.307
24 C24 C C24 N N N 0 -3.883 -0.137 -0.642
25 C25 C C25 N Y N 0 -5.02 -0.056 0.305
26 O26 O O26 N N N 0 -4.028 -0.678 -1.72
27 C27 C C27 N Y N 0 -6.267 -0.597 -0.022
28 C28 C C28 N Y N 0 -7.299 -0.5 0.891
29 C40 C C40 N Y N 0 -4.873 0.557 1.553
30 N30 N N30 N Y N 0 -7.12 0.091 2.055
31 C60 C C60 N Y N 0 -5.959 0.609 2.405
32 H1 H H1 N N N 0 1.672 -3.845 -0.418
33 H2 H H2 N N N 0 -0.642 -4.36 -1.075
34 H4 H H4 N N N 0 2.399 -1.51 -0.177
35 H3 H H3 N N N 0 -2.245 -2.536 -1.487
36 H7 H H7 N N N 0 -1.923 0.403 -2.269
37 H23 H H23 N N N 0 -2.574 0.823 0.554
38 H10 H H10 N N N 0 -1.597 3.245 -1.196
39 H11 H H11 N N N 0 0.355 4.63 -0.629
40 H12 H H12 N N N 0 2.497 3.574 -0.055
41 H16 H H16 N N N 0 4.465 2.324 -0.623
42 H22 H H22 N N N 0 7.175 1.355 -0.081
43 H19 H H19 N N N 0 4.676 -2.437 1.763
44 H20 H H20 N N N 0 7.118 -2.358 1.779
45 H27 H H27 N N N 0 -6.421 -1.082 -0.974
46 H40 H H40 N N N 0 -3.925 0.983 1.847
47 H28 H H28 N N N 0 -8.267 -0.915 0.647
48 H60 H H60 N N N 0 -5.856 1.08 3.372