Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : VRA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -2.099 0.818 0.838
2 C10 C C10 N Y N 0 2.911 -0.756 1.021
3 C11 C C11 N Y N 0 2.408 -1.993 1.39
4 C12 C C12 N Y N 0 1.084 -2.309 1.135
5 C13 C C13 N Y N 0 0.255 -1.388 0.516
6 C2 C C2 N Y N 0 -1.471 0.657 -0.393
7 C22 C C22 N N N 0 5.171 0.811 -0.697
8 C23 C C23 N N N 0 6.686 1.023 -0.656
9 C24 C C24 N N N 0 6.073 -0.239 -0.046
10 C25 C C25 N N N 0 4.542 0.464 -2.048
11 C26 C C26 S N N 0 3.369 -0.495 -1.833
12 C27 C C27 N N N 0 2.858 -0.987 -3.188
13 C3 C C3 N Y N 0 -2.226 0.37 -1.522
14 C31 C C31 N N N 0 4.852 -1.153 2.338
15 C4 C C4 N Y N 0 -3.598 0.245 -1.42
16 C5 C C5 N Y N 0 -4.221 0.405 -0.196
17 C6 C C6 N Y N 0 -3.472 0.692 0.933
18 C8 C C8 N Y N 0 0.755 -0.147 0.139
19 C9 C C9 N Y N 0 2.086 0.172 0.394
20 F15 F F15 N N N 0 -1.367 1.092 1.941
21 F16 F F16 N N N 0 -1.037 -1.697 0.274
22 F17 F F17 N N N 0 0.598 -3.517 1.496
23 H11 H H11 N N N 0 3.05 -2.713 1.876
24 H23 H H23 N N N 0 7.234 0.914 -1.592
25 H23A H H23A N N N 0 7.07 1.778 0.029
26 H24 H H24 N N N 0 6.054 -0.315 1.041
27 H24A H H24A N N N 0 6.218 -1.178 -0.58
28 H25 H H25 N N N 0 4.183 1.375 -2.527
29 H25A H H25A N N N 0 5.288 -0.012 -2.684
30 H26 H H26 N N N 0 2.566 0.025 -1.309
31 H27 H H27 N N N 0 2.61 -0.131 -3.816
32 H27A H H27A N N N 0 3.631 -1.582 -3.674
33 H3 H H3 N N N 0 -1.741 0.244 -2.478
34 H31 H H31 N N N 0 4.934 -2.208 2.078
35 H31A H H31A N N N 0 5.848 -0.741 2.5
36 H31B H H31B N N N 0 4.263 -1.048 3.248
37 H4 H H4 N N N 0 -4.186 0.022 -2.299
38 H6 H H6 N N N 0 -3.961 0.812 1.888
39 HN18 H HN18 N N N 0 2.031 2.053 -0.463
40 HN7 H HN7 N N N 0 0.303 1.517 -0.998
41 HO28 H HO28 N N N 0 1.312 -2.136 -3.813
42 HO29 H HO29 N N N 0 4.517 -2.121 -1.459
43 I14 I I14 N N N 0 -6.302 0.215 -0.049
44 N18 N N18 N N N 0 2.594 1.426 0.019
45 N7 N N7 N N N 0 -0.082 0.784 -0.493
46 O20 O O20 N N N 0 4.253 3.206 0.038
47 O21 O O21 N N N 0 4.303 1.423 1.751
48 O28 O O28 N N N 0 1.691 -1.789 -2.994
49 O29 O O29 N N N 0 3.803 -1.611 -1.053
50 O30 O O30 N N N 0 4.213 -0.448 1.272
51 S19 S S19 N N N 0 4.152 1.836 0.4