Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VDW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 1 -4.751 2.226 -0.17
2 CA1 C C1 S N N 0 -4.783 0.775 -0.396
3 C1 C C2 N N N 0 -5.992 0.187 0.283
4 O11 O O1 N N N 0 -6.542 0.796 1.171
5 O12 O O2 N N N 0 -6.459 -1.012 -0.097
6 CB1 C C3 N N N 0 -3.515 0.141 0.181
7 CG1 C C4 N N N 0 -2.296 0.645 -0.594
8 CD1 C C5 N N N 0 -1.047 0.021 -0.025
9 OE1 O O3 N N N 0 -1.125 -0.751 0.907
10 N2 N N2 N N N 0 0.156 0.32 -0.553
11 CA2 C C6 R N N 0 1.37 -0.287 -0.0010
12 C2 C C7 N N N 0 2.552 0.602 -0.29
13 O2 O O4 N N N 0 2.396 1.64 -0.898
14 CB2 C C8 N N N 0 1.593 -1.657 -0.643
15 SG2 S S1 N N N 0 0.169 -2.727 -0.295
16 N3 N N3 N N N 0 3.783 0.243 0.126
17 CA3 C C9 N N N 0 4.932 1.107 -0.155
18 C3 C C10 N N N 0 6.181 0.483 0.413
19 O31 O O5 N N N 0 6.117 -0.575 0.994
20 O32 O O6 N N N 0 7.363 1.102 0.275
21 HN13 H H1 N N N 0 -3.941 2.62 -0.626
22 HN11 H H2 N N N 0 -5.587 2.644 -0.551
23 HN12 H H3 N N N 0 -4.703 2.411 0.82
24 HA1 H H4 N N N 0 -4.834 0.575 -1.467
25 H1 H H5 N N N 0 -7.238 -1.348 0.368
26 HB13 H H6 N N N 0 -3.418 0.416 1.231
27 HB12 H H7 N N N 0 -3.579 -0.943 0.093
28 HG13 H H8 N N N 0 -2.393 0.371 -1.644
29 HG12 H H9 N N N 0 -2.232 1.73 -0.506
30 HN2 H H10 N N N 0 0.219 0.937 -1.299
31 HA2 H H11 N N N 0 1.259 -0.404 1.077
32 HB23 H H12 N N N 0 1.704 -1.539 -1.721
33 HB22 H H13 N N N 0 2.496 -2.109 -0.232
34 HSG H H14 N N N 0 0.498 -3.877 -0.909
35 HN3 H H15 N N N 0 3.907 -0.587 0.613
36 HA31 H H16 N N N 0 5.043 1.225 -1.233
37 HA32 H H17 N N N 0 4.773 2.083 0.303
38 H2 H H18 N N N 0 8.136 0.663 0.656