Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VBD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -4.443 -0.715 0.757
2 C14 C C2 N N N 0 2.474 -3.162 -1.296
3 C7 C C6 N Y N 0 -0.548 0.67 -0.201
4 C5 C C3 N Y N 0 -5.496 -0.032 0.164
5 C6 C C4 N Y N 0 -5.262 1.168 -0.494
6 C11 C C5 N N N 0 3.844 -1.4 -0.283
7 C8 C C7 N Y N 0 0.234 -1.467 -0.584
8 C9 C C8 N Y N 0 1.528 -0.984 -0.531
9 C10 C C9 N Y N 0 1.734 0.382 -0.306
10 C12 C C10 S N N 0 3.963 -0.042 0.358
11 C13 C C11 N N N 0 3.659 -0.159 1.853
12 N1 N N1 N N N 0 -1.629 1.521 -0.03
13 N2 N N2 N Y N 0 -0.772 -0.617 -0.416
14 C3 C C12 N Y N 0 -3.161 -0.201 0.692
15 N3 N N3 N Y N 0 0.678 1.171 -0.146
16 C1 C C13 N Y N 0 -3.98 1.683 -0.559
17 O1 O O1 N N N 0 4.827 -2.094 -0.433
18 C2 C C14 N Y N 0 -2.927 1.0 0.035
19 N4 N N4 N N N 0 2.631 -1.836 -0.695
20 N5 N N5 N N N 0 3.017 0.895 -0.258
21 F1 F F1 N N N 0 -6.287 1.832 -1.072
22 F2 F F2 N N N 0 -4.672 -1.88 1.401
23 O2 O O2 N N N 0 -6.758 -0.539 0.227
24 C15 C C15 N N N 0 2.19 -4.149 -0.241
25 C16 C C16 N N N 0 1.963 -4.935 0.6
26 C17 C C17 N N N 0 3.04 2.193 0.429
27 C18 C C18 N N N 0 4.396 2.865 0.206
28 C19 C C19 N N N 0 4.662 4.181 0.939
29 C20 C C20 N N N 0 4.413 4.182 -0.572
30 H1 H H1 N N N 0 1.648 -3.143 -2.008
31 H2 H H2 N N N 0 3.393 -3.438 -1.813
32 H3 H H3 N N N 0 0.045 -2.515 -0.759
33 H4 H H4 N N N 0 4.977 0.333 0.224
34 H5 H H5 N N N 0 2.643 -0.529 1.989
35 H6 H H6 N N N 0 4.363 -0.851 2.314
36 H7 H H7 N N N 0 3.754 0.821 2.321
37 H8 H H8 N N N 0 -1.487 2.478 0.045
38 H9 H H9 N N N 0 -2.342 -0.732 1.154
39 H10 H H10 N N N 0 -3.798 2.616 -1.071
40 H11 H H11 N N N 0 -7.261 -0.245 0.999
41 H12 H H12 N N N 0 1.76 -5.639 1.353
42 H13 H H13 N N N 0 2.25 2.829 0.03
43 H14 H H14 N N N 0 2.88 2.043 1.496
44 H15 H H15 N N N 0 5.239 2.188 0.067
45 H16 H H16 N N N 0 3.87 4.569 1.58
46 H17 H H17 N N N 0 5.679 4.37 1.282
47 H18 H H18 N N N 0 5.267 4.372 -1.222
48 H19 H H19 N N N 0 3.458 4.571 -0.924