Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : U10

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 153


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.451 -2.012 -16.522
2 C2 C C2 N N N 0 1.71 -1.528 -17.127
3 C3 C C3 N N N 0 1.856 -0.105 -17.488
4 C4 C C4 N N N 0 0.832 0.753 -17.274
5 C5 C C5 N N N 0 -0.423 0.263 -16.675
6 C6 C C6 N N N 0 -0.561 -1.163 -16.31
7 C1M C C1M N N N 0 0.305 -3.464 -16.148
8 C3M C C3M N N N 0 4.012 0.27 -17.018
9 C4M C C4M N N N 0 0.081 2.293 -18.713
10 C7 C C7 N N N 0 -1.845 -1.662 -15.698
11 C8 C C8 N N N 0 -1.765 -1.545 -14.198
12 C9 C C9 N N N 0 -2.71 -0.923 -13.538
13 C10 C C10 N N N 0 -3.952 -0.461 -14.255
14 C11 C C11 N N N 0 -2.554 -0.668 -12.061
15 C12 C C12 N N N 0 -1.868 0.681 -11.845
16 C13 C C13 N N N 0 -1.712 0.936 -10.368
17 C14 C C14 N N N 0 -0.538 1.242 -9.876
18 C15 C C15 N N N 0 0.624 1.494 -10.802
19 C16 C C16 N N N 0 -0.348 1.342 -8.384
20 C17 C C17 N N N 0 0.059 -0.023 -7.829
21 C18 C C18 N N N 0 0.248 0.076 -6.338
22 C19 C C19 N N N 0 -0.381 -0.75 -5.541
23 C20 C C20 N N N 0 -1.381 -1.726 -6.105
24 C21 C C21 N N N 0 -0.105 -0.726 -4.059
25 C22 C C22 N N N 0 -1.062 0.254 -3.379
26 C23 C C23 N N N 0 -0.786 0.279 -1.897
27 C24 C C24 N N N 0 -0.379 1.384 -1.325
28 C25 C C25 N N N 0 -0.028 2.584 -2.167
29 C26 C C26 N N N 0 -0.261 1.457 0.175
30 C27 C C27 N N N 0 1.143 1.022 0.597
31 C28 C C28 N N N 0 1.261 1.095 2.098
32 C29 C C29 N N N 0 1.69 0.057 2.772
33 C30 C C30 N N N 0 2.227 -1.146 2.042
34 C31 C C31 N N N 0 1.647 0.066 4.279
35 C32 C C32 N N N 0 0.307 -0.5 4.754
36 C33 C C33 N N N 0 0.264 -0.49 6.26
37 C34 C C34 N N N 0 -0.688 0.157 6.884
38 C35 C C35 N N N 0 -1.636 1.034 6.107
39 C36 C C36 N N N 0 -0.834 0.027 8.378
40 C37 C C37 N N N 0 0.0010 1.106 9.069
41 C38 C C38 N N N 0 -0.145 0.975 10.563
42 C39 C C39 N N N 0 0.913 0.791 11.311
43 C40 C C40 N N N 0 2.254 0.538 10.671
44 C41 C C41 N N N 0 0.791 0.833 12.813
45 C42 C C42 N N N 0 0.49 -0.57 13.34
46 C43 C C43 N N N 0 0.368 -0.528 14.841
47 C44 C C44 N N N 0 -0.734 -0.932 15.42
48 C45 C C45 N N N 0 -1.941 -1.275 14.586
49 C46 C C46 N N N 0 -0.797 -1.054 16.921
50 C47 C C47 N N N 0 -1.269 0.271 17.521
51 C48 C C48 N N N 0 -1.332 0.149 19.022
52 C49 C C49 N N N 0 -0.718 1.026 19.776
53 C50 C C50 N N N 0 -0.084 2.243 19.153
54 C51 C C51 N N N 0 -0.647 0.819 21.267
55 C52 C C52 N N N 0 0.613 0.022 21.612
56 C53 C C53 N N N 0 0.684 -0.184 23.103
57 C54 C C54 N N N 0 0.795 -1.394 23.591
58 C55 C C55 N N N 0 0.693 -1.619 25.078
59 C56 C C56 N N N 0 1.026 -2.562 22.666
60 O2 O O2 N N N 0 2.628 -2.3 -17.318
61 O3 O O3 N N N 0 3.014 0.341 -18.039
62 O4 O O4 N N N 0 0.96 2.062 -17.61
63 O5 O O5 N N N 0 -1.344 1.031 -16.482
64 H1M1 H 1H1M N N N 0 1.225 -3.996 -16.392
65 H1M2 H 2H1M N N N 0 0.111 -3.547 -15.079
66 H1M3 H 3H1M N N N 0 -0.524 -3.901 -16.703
67 H3M1 H 1H3M N N N 0 4.977 0.561 -17.432
68 H3M2 H 2H3M N N N 0 3.747 0.946 -16.204
69 H3M3 H 3H3M N N N 0 4.071 -0.749 -16.638
70 H4M1 H 1H4M N N N 0 0.103 3.35 -18.979
71 H4M2 H 2H4M N N N 0 0.404 1.696 -19.566
72 H4M3 H 3H4M N N N 0 -0.933 2.009 -18.434
73 H71 H 1H7 N N N 0 -2.679 -1.063 -16.065
74 H72 H 2H7 N N N 0 -1.998 -2.705 -15.974
75 H8 H H8 N N N 0 -0.929 -1.975 -13.667
76 H101 H 1H10 N N N 0 -3.929 -0.816 -15.286
77 H102 H 2H10 N N N 0 -4.832 -0.861 -13.752
78 H103 H 3H10 N N N 0 -3.993 0.627 -14.247
79 H111 H 1H11 N N N 0 -3.537 -0.655 -11.589
80 H112 H 2H11 N N N 0 -1.949 -1.458 -11.617
81 H121 H 1H12 N N N 0 -0.885 0.669 -12.317
82 H122 H 2H12 N N N 0 -2.473 1.472 -12.289
83 H13 H H13 N N N 0 -2.57 0.866 -9.715
84 H151 H 1H15 N N N 0 0.277 1.473 -11.835
85 H152 H 2H15 N N N 0 1.057 2.47 -10.584
86 H153 H 3H15 N N N 0 1.379 0.721 -10.656
87 H161 H 1H16 N N N 0 0.431 2.071 -8.165
88 H162 H 2H16 N N N 0 -1.282 1.659 -7.92
89 H171 H 1H17 N N N 0 -0.721 -0.752 -8.048
90 H172 H 2H17 N N N 0 0.993 -0.34 -8.294
91 H18 H H18 N N N 0 0.904 0.829 -5.926
92 H201 H 1H20 N N N 0 -1.379 -1.661 -7.193
93 H202 H 2H20 N N N 0 -1.113 -2.738 -5.801
94 H203 H 3H20 N N N 0 -2.376 -1.485 -5.729
95 H211 H 1H21 N N N 0 -0.253 -1.723 -3.646
96 H212 H 2H21 N N N 0 0.922 -0.41 -3.886
97 H221 H 1H22 N N N 0 -0.914 1.252 -3.792
98 H222 H 2H22 N N N 0 -2.091 -0.061 -3.552
99 H23 H H23 N N N 0 -0.925 -0.614 -1.307
100 H251 H 1H25 N N N 0 -0.083 2.316 -3.222
101 H252 H 2H25 N N N 0 -0.73 3.391 -1.96
102 H253 H 3H25 N N N 0 0.983 2.912 -1.928
103 H261 H 1H26 N N N 0 -0.439 2.481 0.504
104 H262 H 2H26 N N N 0 -0.998 0.795 0.63
105 H271 H 1H27 N N N 0 1.321 0.0 0.268
106 H272 H 2H27 N N N 0 1.88 1.684 0.143
107 H28 H H28 N N N 0 0.992 2.003 2.618
108 H301 H 1H30 N N N 0 2.147 -0.984 0.967
109 H302 H 2H30 N N N 0 3.273 -1.297 2.309
110 H303 H 3H30 N N N 0 1.65 -2.028 2.321
111 H311 H 1H31 N N N 0 2.459 -0.545 4.669
112 H312 H 2H31 N N N 0 1.757 1.089 4.639
113 H321 H 1H32 N N N 0 -0.505 0.112 4.363
114 H322 H 2H32 N N N 0 0.197 -1.522 4.394
115 H33 H H33 N N N 0 1.018 -1.018 6.825
116 H351 H 1H35 N N N 0 -1.311 1.089 5.068
117 H352 H 2H35 N N N 0 -2.64 0.611 6.152
118 H353 H 3H35 N N N 0 -1.643 2.034 6.54
119 H361 H 1H36 N N N 0 -1.882 0.148 8.652
120 H362 H 2H36 N N N 0 -0.488 -0.957 8.692
121 H371 H 1H37 N N N 0 1.049 0.984 8.795
122 H372 H 2H37 N N N 0 -0.344 2.091 8.754
123 H38 H H38 N N N 0 -1.123 1.034 11.016
124 H401 H 1H40 N N N 0 2.128 0.435 9.593
125 H402 H 2H40 N N N 0 2.921 1.374 10.881
126 H403 H 3H40 N N N 0 2.682 -0.378 11.076
127 H411 H 1H41 N N N 0 1.727 1.19 13.244
128 H412 H 2H41 N N N 0 -0.017 1.508 13.093
129 H421 H 1H42 N N N 0 -0.444 -0.927 12.909
130 H422 H 2H42 N N N 0 1.3 -1.245 13.06
131 H43 H H43 N N N 0 1.191 -0.165 15.44
132 H451 H 1H45 N N N 0 -1.745 -1.024 13.543
133 H452 H 2H45 N N N 0 -2.15 -2.341 14.67
134 H453 H 3H45 N N N 0 -2.801 -0.707 14.94
135 H461 H 1H46 N N N 0 -1.495 -1.846 17.192
136 H462 H 2H46 N N N 0 0.193 -1.295 17.307
137 H471 H 1H47 N N N 0 -0.571 1.062 17.25
138 H472 H 2H47 N N N 0 -2.26 0.512 17.135
139 H48 H H48 N N N 0 -1.883 -0.661 19.475
140 H501 H 1H50 N N N 0 -0.319 2.271 18.09
141 H502 H 2H50 N N N 0 -0.47 3.141 19.635
142 H503 H 3H50 N N N 0 0.996 2.197 19.285
143 H511 H 1H51 N N N 0 -0.612 1.787 21.767
144 H512 H 2H51 N N N 0 -1.527 0.269 21.6
145 H521 H 1H52 N N N 0 0.579 -0.945 21.111
146 H522 H 2H52 N N N 0 1.493 0.573 21.279
147 H53 H H53 N N N 0 0.644 0.665 23.768
148 H551 H 1H55 N N N 0 0.809 -2.681 25.293
149 H552 H 2H55 N N N 0 1.477 -1.057 25.585
150 H553 H 3H55 N N N 0 -0.281 -1.282 25.43
151 H561 H 1H56 N N N 0 1.18 -2.196 21.651
152 H562 H 2H56 N N N 0 1.908 -3.114 22.991
153 H563 H 3H56 N N N 0 0.157 -3.22 22.688