Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TPP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1' N N1' N Y N 0 -6.096 -2.273 -0.022
2 C2' C C2' N Y N 0 -7.012 -1.612 0.656
3 CM2 C CM2 N N N 0 -8.035 -2.382 1.451
4 N3' N N3' N Y N 0 -7.058 -0.295 0.66
5 C4' C C4' N Y N 0 -6.172 0.417 -0.03
6 N4' N N4' N N N 0 -6.223 1.801 -0.024
7 C5' C C5' N Y N 0 -5.188 -0.254 -0.76
8 C6' C C6' N Y N 0 -5.178 -1.634 -0.733
9 C7' C C7' N N N 0 -4.162 0.511 -1.557
10 N3 N N3 N Y N 1 -3.086 0.956 -0.668
11 C2 C C2 N Y N 0 -3.122 2.112 -0.095
12 S1 S S1 N Y N 0 -1.73 2.334 0.873
13 C5 C C5 N Y N 0 -1.143 0.738 0.41
14 C4 C C4 N Y N 0 -2.043 0.192 -0.414
15 CM4 C CM4 N N N 0 -1.875 -1.182 -1.009
16 C6 C C6 N N N 0 0.142 0.099 0.869
17 C7 C C7 N N N 0 1.267 0.463 -0.102
18 O7 O O7 N N N 0 2.486 -0.144 0.332
19 PA P PA S N N 0 3.88 0.027 -0.455
20 O1A O O1A N N N 0 4.181 1.467 -0.617
21 O2A O O2A N N N 0 3.765 -0.663 -1.905
22 O3A O O3A N N N 0 5.06 -0.677 0.383
23 PB P PB N N N 0 6.664 -0.536 0.392
24 O1B O O1B N N N 0 7.154 -0.393 -0.997
25 O2B O O2B N N N 0 7.083 0.763 1.246
26 O3B O O3B N N N 0 7.314 -1.849 1.059
27 HM21 H HM21 N N N 0 -7.66 -2.548 2.461
28 HM22 H HM22 N N N 0 -8.964 -1.814 1.496
29 HM23 H HM23 N N N 0 -8.22 -3.343 0.97
30 HN41 H HN41 N N N 0 -6.909 2.259 0.486
31 HN42 H HN42 N N N 0 -5.572 2.313 -0.53
32 H6' H H6' N N N 0 -4.432 -2.186 -1.285
33 H7'1 H H7'1 N N N 0 -3.748 -0.136 -2.331
34 H7'2 H H7'2 N N N 0 -4.633 1.377 -2.02
35 H2 H H2 N N N 0 -3.916 2.835 -0.21
36 HM41 H HM41 N N N 0 -1.256 -1.117 -1.904
37 HM42 H HM42 N N N 0 -1.394 -1.836 -0.282
38 HM43 H HM43 N N N 0 -2.852 -1.586 -1.272
39 H61 H H61 N N N 0 0.392 0.46 1.866
40 H62 H H62 N N N 0 0.02 -0.984 0.895
41 H71 H H71 N N N 0 1.017 0.101 -1.1
42 H72 H H72 N N N 0 1.389 1.545 -0.128
43 HOA2 H HOA2 N N N 0 3.568 -1.609 -1.876
44 HOB2 H HOB2 N N N 0 6.793 0.738 2.168
45 HOB3 H HOB3 N N N 0 8.28 -1.833 1.098