Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : THG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N3 N N3 N Y N 0 1.763 1.442 5.858
2 C2 C C2 N Y N 0 2.51 0.304 5.844
3 N1 N N1 N Y N 0 1.98 -0.865 5.558
4 C8A C C8A N Y N 0 0.68 -0.979 5.263
5 C4A C C4A N Y N 0 -0.124 0.151 5.261
6 C4 C C4 N Y N 0 0.446 1.392 5.566
7 N8 N N8 N N N 0 0.133 -2.215 4.956
8 C7 C C7 N N N 0 -1.325 -2.384 5.01
9 C6 C C6 S N N 0 -1.977 -1.186 4.303
10 N5 N N5 N N N 0 -1.498 0.043 4.955
11 C9 C C9 N N N 0 -1.577 -1.177 2.826
12 N10 N N10 N N N 0 -2.174 -0.014 2.165
13 C4' C C4' N Y N 0 -1.95 0.207 0.811
14 C3' C C3' N Y N 0 -2.518 1.313 0.185
15 C2' C C2' N Y N 0 -2.298 1.535 -1.154
16 C1' C C1' N Y N 0 -1.503 0.648 -1.887
17 C6' C C6' N Y N 0 -0.934 -0.46 -1.255
18 C5' C C5' N Y N 0 -1.153 -0.674 0.086
19 C11 C C11 N N N 0 -1.266 0.883 -3.324
20 N N N N N N 0 -0.5 0.027 -4.029
21 CA C CA S N N 0 -0.264 0.261 -5.456
22 C C C N N N 0 -1.334 -0.429 -6.261
23 OX2 O OX2 N N N 0 -1.908 -1.549 -5.794
24 OX1 O OX1 N N N 0 -1.676 0.024 -7.327
25 CB C CB N N N 0 1.106 -0.297 -5.844
26 CG C CG N N N 0 2.192 0.404 -5.027
27 CD C CD N N N 0 3.542 -0.145 -5.41
28 OE1 O OE1 N N N 0 3.626 -1.009 -6.25
29 OE2 O OE2 N N N 0 4.651 0.324 -4.817
30 O11 O O11 N N N 0 -1.762 1.848 -3.872
31 O4 O O4 N N N 0 -0.233 2.407 5.572
32 N2 N N2 N N N 0 3.848 0.378 6.14
33 HN3 H HN3 N N N 0 2.18 2.291 6.072
34 HN8 H HN8 N N N 0 0.705 -2.959 4.711
35 HC71 H 1HC7 N N N 0 -1.653 -2.42 6.048
36 HC72 H 2HC7 N N N 0 -1.607 -3.307 4.503
37 HC6 H HC6 N N N 0 -3.061 -1.251 4.39
38 HN5 H HN5 N N N 0 -2.113 0.762 5.17
39 HC91 H 1HC9 N N N 0 -0.491 -1.124 2.744
40 HC92 H 2HC9 N N N 0 -1.933 -2.089 2.348
41 H10 H H10 N N N 0 -2.725 0.601 2.673
42 HC3 H HC3 N N N 0 -3.132 1.997 0.751
43 HC2 H HC2 N N N 0 -2.739 2.393 -1.64
44 HC61 H 1HC6 N N N 0 -0.32 -1.147 -1.819
45 HC5 H HC5 N N N 0 -0.714 -1.531 0.574
46 HN H HN N N N 0 -0.104 -0.742 -3.592
47 HCA H HCA N N N 0 -0.291 1.331 -5.659
48 HX2 H HX2 N N N 0 -2.595 -1.993 -6.311
49 HCB1 H 1HCB N N N 0 1.133 -1.367 -5.642
50 HCB2 H 2HCB N N N 0 1.281 -0.123 -6.906
51 HCG1 H 1HCG N N N 0 2.165 1.474 -5.23
52 HCG2 H 2HCG N N N 0 2.017 0.23 -3.965
53 HE2 H HE2 N N N 0 5.517 -0.028 -5.062
54 HN21 H 1HN2 N N N 0 4.39 -0.425 6.138
55 HN22 H 2HN2 N N N 0 4.252 1.235 6.349