Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TC6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 95


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 12.764 2.08 0.091
2 O1 O O1 N N N 0 12.393 2.06 -1.068
3 C2 C C2 N N N 0 13.946 2.867 0.472
4 C3 C C3 N N N 0 14.611 3.557 -0.449
5 C4 C C4 N N N 0 15.823 4.364 -0.059
6 C5 C C5 N N N 0 17.016 3.939 -0.917
7 C6 C C6 N N N 0 18.246 4.758 -0.521
8 N1A N N1A N Y N 0 -4.721 7.663 -0.175
9 O1A O O1A N N N 0 -5.014 -2.615 -2.473
10 P1A P P1A N N N 0 -5.044 -2.892 -0.954
11 C1B C C1B R N N 0 -6.088 2.682 0.375
12 S1P S S1P N N N 0 11.879 1.171 1.314
13 C2A C C2A N Y N 0 -5.528 7.122 0.719
14 O2A O O2A N N N -1 -6.1 -3.977 -0.649
15 P2A P P2A N N N 0 -2.493 -4.394 -1.104
16 C2B C C2B R N N 0 -7.544 2.619 -0.153
17 O2B O O2B N N N 0 -8.358 3.61 0.478
18 C2P C C2P N N N 0 10.578 0.445 0.286
19 N3A N N3A N Y N 0 -5.792 5.833 0.746
20 O3A O O3A N N N 0 -3.595 -3.404 -0.473
21 C3B C C3B S N N 0 -7.98 1.195 0.269
22 O3B O O3B N N N 0 -8.724 1.24 1.488
23 P3B P P3B N N N 0 -10.232 0.689 1.616
24 C3P C C3P N N N 0 9.658 -0.413 1.157
25 C4A C C4A N Y N 0 -5.243 5.011 -0.144
26 O4A O O4A N N N -1 -2.965 -5.857 -0.948
27 C4B C C4B R N N 0 -6.653 0.439 0.475
28 O4B O O4B N N N 0 -5.589 1.347 0.146
29 N4P N N4P N N N 0 8.605 -1.0 0.325
30 C5A C C5A N Y N 0 -4.377 5.538 -1.116
31 O5A O O5A N N N 0 -2.306 -4.069 -2.602
32 C5B C C5B N N N 0 -6.601 -0.78 -0.448
33 O5B O O5B N N N 0 -5.422 -1.539 -0.168
34 C5P C C5P N N N 0 7.674 -1.8 0.882
35 O5P O O5P N N N 0 7.707 -2.032 2.071
36 C6A C C6A N Y N 0 -4.127 6.92 -1.104
37 N6A N N6A N N N 0 -3.283 7.496 -2.037
38 O6A O O6A N N N 0 -1.092 -4.198 -0.334
39 C6P C C6P N N N 0 6.59 -2.404 0.025
40 N7A N N7A N Y N 0 -3.963 4.502 -1.885
41 O7A O O7A N N N -1 -10.242 -0.861 1.387
42 C7P C C7P N N N 0 5.671 -3.262 0.897
43 C8A C C8A N Y N 0 -4.508 3.4 -1.457
44 O8A O O8A N N N -1 -10.785 1.009 3.046
45 N8P N N8P N N N 0 4.618 -3.849 0.065
46 N9A N N9A N Y N 0 -5.306 3.662 -0.384
47 O9A O O9A N N N 0 -11.135 1.382 0.539
48 C9P C C9P N N N 0 3.686 -4.648 0.621
49 O9P O O9P N N N 0 3.772 -4.957 1.791
50 CAP C CAP R N N 0 2.538 -5.159 -0.21
51 OAP O OAP N N N 0 2.795 -4.896 -1.591
52 CBP C CBP N N N 0 1.248 -4.451 0.212
53 CCP C CCP N N N 0 0.112 -4.859 -0.728
54 CDP C CDP N N N 0 0.893 -4.852 1.645
55 CEP C CEP N N N 0 1.451 -2.937 0.141
56 H2 H H2 N N N 0 14.275 2.884 1.501
57 H3 H H3 N N N 0 14.283 3.54 -1.478
58 H4 H H4 N N N 0 15.62 5.423 -0.216
59 H4A H H4A N N N 0 16.052 4.189 0.993
60 H5 H H5 N N N 0 17.219 2.88 -0.76
61 H5A H H5A N N N 0 16.787 4.114 -1.969
62 H6 H H6 N N N 0 18.044 5.818 -0.678
63 H6A H H6A N N N 0 18.475 4.584 0.531
64 H6B H H6B N N N 0 19.096 4.456 -1.133
65 H1B H H1B N N N 0 -6.075 2.92 1.439
66 H2A H H2A N N N 0 -5.99 7.762 1.457
67 H2B H H2B N N N 0 -7.57 2.729 -1.237
68 HO2B H HO2B N N N 0 -8.069 4.518 0.316
69 H2P H H2P N N N 0 9.997 1.241 -0.181
70 H2PA H H2PA N N N 0 11.03 -0.176 -0.487
71 H3B H H3B N N N 0 -8.57 0.727 -0.52
72 H3P H H3P N N N 0 10.239 -1.209 1.624
73 H3PA H H3PA N N N 0 9.206 0.208 1.93
74 H4B H H4B N N N 0 -6.564 0.123 1.515
75 HN4P H HN4P N N N 0 8.579 -0.814 -0.627
76 H5B H H5B N N N 0 -7.481 -1.401 -0.28
77 H5BA H H5BA N N N 0 -6.582 -0.45 -1.486
78 HN6A H HN6A N N N 0 -3.119 8.452 -2.019
79 HN6B H HN6B N N N 0 -2.855 6.943 -2.71
80 H6P H H6P N N N 0 6.01 -1.608 -0.441
81 H6PA H H6PA N N N 0 7.042 -3.025 -0.748
82 H7P H H7P N N N 0 6.251 -4.058 1.364
83 H7PA H H7PA N N N 0 5.219 -2.641 1.67
84 H8A H H8A N N N 0 -4.35 2.423 -1.888
85 HN8P H HN8P N N N 0 4.591 -3.663 -0.887
86 HAP H HAP N N N 0 2.429 -6.233 -0.059
87 HOAP H HOAP N N N 0 2.903 -3.958 -1.799
88 HCP H HCP N N N 0 -0.032 -5.938 -0.677
89 HCPA H HCPA N N N 0 0.365 -4.574 -1.749
90 HDP H HDP N N N 0 1.666 -4.493 2.325
91 HDPA H HDPA N N N 0 -0.065 -4.41 1.919
92 HDPB H HDPB N N N 0 0.825 -5.937 1.713
93 HEP H HEP N N N 0 1.705 -2.652 -0.88
94 HEPA H HEPA N N N 0 0.533 -2.432 0.441
95 HEPB H HEPB N N N 0 2.261 -2.647 0.81