Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T6T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 24


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C6 N N N 0 2.421 0.638 -0.172
2 C2 C C5 S N N 0 1.077 0.028 0.228
3 C3 C C4 S N N 0 0.0 1.117 0.221
4 C4 C C3 S N N 0 -1.354 0.487 0.565
5 C5 C C2 R N N 0 -1.652 -0.633 -0.437
6 C6 C C1 N N N 0 -0.511 -1.653 -0.405
7 H11 H H61 N N N 0 2.343 1.066 -1.172
8 H12 H H62 N N N 0 2.691 1.421 0.537
9 H3 H HAF N N N 0 0.247 1.878 0.962
10 H4 H H3 N N N 0 -1.319 0.074 1.573
11 H5 H H2 N N N 0 -1.736 -0.212 -1.439
12 H61 H H11 N N N 0 -0.454 -2.103 0.586
13 H62 H H12 N N N 0 -0.698 -2.43 -1.146
14 HO1 H HO6 N N Y 0 4.307 -0.062 -0.411
15 HO2 H HO5' N N Y 0 1.844 -1.23 1.617
16 HO3 H HO4 N N Y 0 -0.729 2.414 -1.152
17 HO4 H HO3 N N Y 0 -3.262 1.152 0.694
18 HO5 H HO2 N N Y 0 -3.13 -1.997 -0.677
19 O1 O O6 N N N 0 3.426 -0.377 -0.166
20 O2 O O5' N N Y 0 1.179 -0.532 1.539
21 O3 O O4 N N N 0 -0.066 1.714 -1.075
22 O4 O O3 N N N 0 -2.376 1.482 0.489
23 O5 O O2 N N N 0 -2.878 -1.276 -0.084
24 O6 O O5 N N N 0 0.722 -0.997 -0.702