Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SPM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C11 C C11 N N N 0 -0.433 0.0050 -4.237
2 C12 C C12 N N N 0 0.407 -0.032 -5.515
3 C13 C C13 N N N 0 -0.515 0.0050 -6.734
4 C2 C C2 N N N 0 0.514 -0.023 6.734
5 C3 C C3 N N N 0 -0.408 0.014 5.515
6 C4 C C4 N N N 0 0.432 -0.022 4.237
7 C6 C C6 N N N 0 0.411 -0.024 1.88
8 C7 C C7 N N N 0 -0.451 0.011 0.617
9 C8 C C8 N N N 0 0.45 -0.028 -0.617
10 C9 C C9 N N N 0 -0.412 0.0060 -1.88
11 H111 H 1H11 N N N 0 -1.099 -0.857 -4.215
12 H112 H 2H11 N N N 0 -1.023 0.921 -4.217
13 H121 H 1H12 N N N 0 1.074 0.83 -5.536
14 H122 H 2H12 N N N 0 0.998 -0.948 -5.534
15 H131 H 1H13 N N N 0 -1.181 -0.856 -6.713
16 H132 H 2H13 N N N 0 -1.105 0.921 -6.714
17 H21 H 1H2 N N N 0 1.181 0.838 6.713
18 H22 H 2H2 N N N 0 1.105 -0.939 6.715
19 H31 H 1H3 N N N 0 -1.074 -0.847 5.536
20 H32 H 2H3 N N N 0 -0.999 0.93 5.534
21 H41 H 1H4 N N N 0 1.098 0.839 4.215
22 H42 H 2H4 N N N 0 1.023 -0.938 4.217
23 H61 H 1H6 N N N 0 1.078 0.838 1.889
24 H62 H 2H6 N N N 0 1.002 -0.94 1.891
25 H71 H 1H7 N N N 0 -1.117 -0.851 0.608
26 H72 H 2H7 N N N 0 -1.042 0.927 0.607
27 H81 H 1H8 N N N 0 1.117 0.833 -0.608
28 H82 H 2H8 N N N 0 1.041 -0.944 -0.607
29 H91 H 1H9 N N N 0 -1.079 -0.855 -1.889
30 H92 H 2H9 N N N 0 -1.003 0.922 -1.891
31 HN0 H HN0 N N N 0 0.976 0.831 -3.071
32 HN11 H 1HN1 N N N 0 -0.739 0.916 7.988
33 HN12 H 2HN1 N N N 0 0.354 -0.014 8.735
34 HN41 H 1HN4 N N N 0 -0.354 -0.0030 -8.735
35 HN42 H 2HN4 N N N 0 0.814 0.833 -7.99
36 HN5 H HN5 N N N 0 -0.976 -0.849 3.071
37 N1 N N1 N N N 0 -0.292 0.012 7.961
38 N10 N N10 N N N 0 0.453 -0.031 -3.066
39 N14 N N14 N N N 0 0.292 -0.029 -7.961
40 N5 N N5 N N N 0 -0.453 0.013 3.066