Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SPK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 1 -7.975 0.306 0.0
2 C2 C C2 N N N 0 -6.765 -0.527 0.0
3 C3 C C3 N N N 0 -5.527 0.372 0.0
4 C4 C C4 N N N 0 -4.267 -0.496 0.0
5 N5 N N5 N N N 1 -3.078 0.368 0.0
6 C6 C C6 N N N 0 -1.868 -0.465 0.0
7 C7 C C7 N N N 0 -0.63 0.434 0.0
8 C8 C C8 N N N 0 0.63 -0.434 0.0
9 C9 C C9 N N N 0 1.868 0.465 0.0
10 N10 N N10 N N N 1 3.078 -0.368 0.0
11 C11 C C11 N N N 0 4.267 0.496 0.0
12 C12 C C12 N N N 0 5.527 -0.372 0.0
13 C13 C C13 N N N 0 6.765 0.527 0.0
14 N14 N N14 N N N 1 7.975 -0.306 0.0
15 H1A H H1A N N N 0 -7.982 0.888 -0.824
16 H1B H H1B N N N 0 -7.982 0.888 0.824
17 H1C H H1C N N N 0 -8.792 -0.287 0.0
18 H2A H H2A N N N 0 -6.757 -1.156 0.89
19 H2B H H2B N N N 0 -6.757 -1.156 -0.89
20 H3A H H3A N N N 0 -5.535 1.001 -0.89
21 H3B H H3B N N N 0 -5.535 1.001 0.89
22 H4A H H4A N N N 0 -4.259 -1.125 0.89
23 H4B H H4B N N N 0 -4.259 -1.125 -0.89
24 H5A H H5A N N N 0 -3.086 0.95 -0.824
25 H5B H H5B N N N 0 -3.086 0.95 0.824
26 H6A H H6A N N N 0 -1.86 -1.095 0.89
27 H6B H H6B N N N 0 -1.86 -1.095 -0.89
28 H7A H H7A N N N 0 -0.638 1.063 -0.89
29 H7B H H7B N N N 0 -0.638 1.063 0.89
30 H8A H H8A N N N 0 0.638 -1.063 0.89
31 H8B H H8B N N N 0 0.638 -1.063 -0.89
32 H9A H H9A N N N 0 1.86 1.095 -0.89
33 H9B H H9B N N N 0 1.86 1.095 0.89
34 H101 H 1H10 N N N 0 3.086 -0.95 0.824
35 H102 H 2H10 N N N 0 3.086 -0.95 -0.824
36 H111 H 1H11 N N N 0 4.259 1.125 -0.89
37 H112 H 2H11 N N N 0 4.259 1.125 0.89
38 H121 H 1H12 N N N 0 5.535 -1.001 0.89
39 H122 H 2H12 N N N 0 5.535 -1.001 -0.89
40 H131 H 1H13 N N N 0 6.757 1.156 -0.89
41 H132 H 2H13 N N N 0 6.757 1.156 0.89
42 H141 H 1H14 N N N 0 7.982 -0.888 0.824
43 H143 H 3H14 N N N 0 8.792 0.287 0.0
44 H142 H 2H14 N N N 0 7.982 -0.888 -0.824