Chemical Components in the PDB

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  • ZCD (Stereoisomer)
  • 3MK (Stereoisomer)
  • WOO (Stereoisomer)
  • GL0 (Stereoisomer)
  • MAN (Stereoisomer)
  • ZEE (Stereoisomer)
  • Z2D (Stereoisomer)
  • BMA (Stereoisomer)
  • GXL (Stereoisomer)
  • 4GL (Stereoisomer)
  • Z0F (Stereoisomer)
  • Z6H (Stereoisomer)
  • SDY (Stereoisomer)
  • AFD (Stereoisomer)
  • GUP (Stereoisomer)
  • 4N2 (Stereoisomer)
  • ALL (Stereoisomer)
  • GIV (Stereoisomer)
  • GLA (Stereoisomer)
  • GLC (Stereoisomer)
  • Z8T (Stereoisomer)
  • BGC (Stereoisomer)
  • GAL (Stereoisomer)
  • Z8H (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : SHD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 24


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -0.89 1.461 0.084
2 C2 C C2 S N N 0 -1.812 0.357 -0.441
3 C3 C C3 R N N 0 -1.29 -1.002 0.034
4 C4 C C4 S N N 0 0.155 -1.178 -0.441
5 C5 C C5 R N N 0 1.001 -0.015 0.084
6 C6 C C6 N N N 0 2.434 -0.15 -0.436
7 O2 O O1 N N N 0 -1.829 0.389 -1.87
8 O3 O O2 N N N 0 -1.334 -1.058 1.462
9 O4 O O3 N N N 0 0.676 -2.411 0.058
10 O5 O O4 N N N 0 0.444 1.221 -0.369
11 O6 O O5 N N N 0 3.25 0.868 0.146
12 H1 H H11 N N N 0 -1.231 2.427 -0.287
13 O1 O O6 N N Y 0 -0.914 1.462 1.513
14 H2 H H2 N N N 0 -2.821 0.514 -0.06
15 H4 H H4 N N N 0 0.182 -1.184 -1.531
16 H5 H H5 N N N 0 1.007 -0.033 1.174
17 H61 H H16 N N N 0 2.827 -1.13 -0.167
18 H62 H H26 N N N 0 2.438 -0.043 -1.521
19 HO3 H HO3 N N Y 0 -2.22 -0.948 1.833
20 HO4 H HO4 N N Y 0 0.184 -3.192 -0.231
21 HO6 H HO6 N N Y 0 4.174 0.842 -0.139
22 H3 H H111 N N N 0 -1.91 -1.797 -0.382
23 HO2 H H12 N N Y 0 -2.144 1.224 -2.241
24 HO1 H H121 N N Y 0 -0.352 2.138 1.915