Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : SDN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4 O O4 N N N 0 4.077 -1.835 0.445
2 C11 C C11 N Y N 0 3.827 -0.504 0.361
3 C12 C C12 N Y N 0 2.564 -0.046 -0.036
4 C13 C C13 N N N 0 1.497 -0.99 -0.408
5 O5 O O5 N N N 0 1.738 -2.147 -0.711
6 C14 C C14 N N N 0 0.126 -0.463 -0.393
7 C15 C C15 N N N 0 -0.977 -1.267 -0.234
8 O3 O O3 N N N 0 -2.21 -0.765 -0.17
9 C16 C C16 N N N 0 -0.786 -2.758 -0.129
10 C10 C C10 N Y N 0 4.816 0.412 0.674
11 C9 C C9 N Y N 0 4.563 1.774 0.596
12 C8 C C8 N Y N 0 3.326 2.243 0.215
13 C7 C C7 N Y N 0 2.302 1.341 -0.097
14 C6 C C6 N N N 0 0.975 1.829 -0.471
15 C5 C C5 N N N 0 -0.063 0.985 -0.574
16 C4 C C4 N N N 0 -1.46 1.459 -0.899
17 C3 C C3 S N N 0 -2.438 0.653 -0.032
18 C2 C C2 N N N 0 -3.871 0.97 -0.466
19 C1 C C1 N N N 0 -4.84 0.28 0.458
20 O2 O O2 N N N 0 -4.428 -0.397 1.37
21 O1 O O1 N N N 0 -6.162 0.416 0.268
22 HO4 H HO4 N N N 0 4.414 -2.224 -0.374
23 H161 H H161 N N N 0 -0.086 -2.979 0.677
24 H162 H H162 N N N 0 -1.744 -3.233 0.083
25 H163 H H163 N N N 0 -0.391 -3.141 -1.069
26 H10 H H10 N N N 0 5.791 0.065 0.981
27 H9 H H9 N N N 0 5.348 2.476 0.837
28 H8 H H8 N N N 0 3.145 3.306 0.162
29 H41 H H41 N N N 0 -1.551 2.522 -0.675
30 H6 H H6 N N N 0 0.827 2.882 -0.662
31 HO1 H HO1 N N N 0 -6.745 -0.045 0.887
32 H42 H H42 N N N 0 -1.673 1.283 -1.953
33 H3 H H3 N N N 0 -2.311 0.94 1.012
34 H21 H H21 N N N 0 -4.033 2.047 -0.424
35 H22 H H22 N N N 0 -4.028 0.619 -1.486