Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SD5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C02 N Y N 0 4.065 2.865 0.15
2 C03 C C03 N Y N 0 4.084 1.473 0.107
3 C04 C C04 N Y N 0 2.892 0.785 0.0010
4 C05 C C05 N Y N 0 1.702 1.521 -0.06
5 C06 C C06 N Y N 0 1.763 2.911 -0.011
6 C08 C C08 N Y N 0 0.396 0.829 -0.175
7 C09 C C09 N Y N 0 -0.787 1.561 -0.241
8 C10 C C10 N Y N 0 -1.991 0.866 -0.349
9 C12 C C12 N Y N 0 -0.825 -1.127 -0.319
10 C15 C C15 N N N 0 -1.694 -3.056 0.71
11 C16 C C16 N N N 0 -1.736 -4.582 0.593
12 C18 C C18 N N N 0 0.452 -4.585 -0.382
13 C19 C C19 N N N 0 0.516 -3.06 -0.274
14 C21 C C21 N N N 0 -4.325 0.619 -0.527
15 C22 C C22 N N N 0 -5.625 1.417 -0.66
16 C24 C C24 N N N 0 -4.67 3.219 0.596
17 C25 C C25 N N N 0 -3.361 2.44 0.742
18 C26 C C26 N N N 0 2.872 -0.721 -0.049
19 F27 F F27 N N N 0 2.288 -1.14 -1.249
20 F28 F F28 N N N 0 4.181 -1.208 0.028
21 F29 F F29 N N N 0 2.127 -1.213 1.029
22 H03 H H03 N N N 0 5.021 0.938 0.156
23 H06 H H06 N N N 0 0.851 3.488 -0.058
24 H09 H H09 N N N 0 -0.773 2.64 -0.209
25 H15 H H15 N N N 0 -1.283 -2.776 1.68
26 H15A H H15A N N N 0 -2.703 -2.655 0.613
27 H16 H H16 N N N 0 -2.318 -4.994 1.417
28 H16A H H16A N N N 0 -2.196 -4.861 -0.355
29 H18 H H18 N N N 0 1.453 -5.001 -0.262
30 H18A H H18A N N N 0 0.056 -4.866 -1.358
31 H19 H H19 N N N 0 1.12 -2.662 -1.09
32 H19A H H19A N N N 0 0.963 -2.78 0.68
33 H21 H H21 N N N 0 -4.194 -0.012 -1.406
34 H21A H H21A N N N 0 -4.371 -0.0050 0.366
35 H22 H H22 N N N 0 -5.602 2.0 -1.581
36 H22A H H22A N N N 0 -6.472 0.731 -0.685
37 H24 H H24 N N N 0 -4.619 3.854 -0.288
38 H24A H H24A N N N 0 -4.827 3.837 1.48
39 H25 H H25 N N N 0 -3.391 1.845 1.655
40 H25A H H25A N N N 0 -2.525 3.138 0.789
41 HN01 H HN01 N N N 0 5.253 4.533 0.291
42 HN0A H HN0A N N N 0 6.1 3.082 0.301
43 N01 N N01 N N N 0 5.259 3.563 0.257
44 N07 N N07 N Y N 0 2.921 3.531 0.096
45 N11 N N11 N Y N 0 -1.969 -0.463 -0.384
46 N13 N N13 N Y N 0 0.338 -0.502 -0.221
47 N14 N N14 N N N 0 -0.845 -2.51 -0.359
48 N20 N N20 N N N 0 -3.194 1.551 -0.417
49 O17 O O17 N N N 0 -0.402 -5.095 0.646
50 O23 O O23 N N N 0 -5.755 2.297 0.459