Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SCA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 95


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1' R N N 0 -2.313 -0.605 -6.563
2 C2 C C2 N Y N 0 -6.33 -1.963 -8.035
3 C2' C C2' R N N 0 -2.176 0.896 -6.922
4 C3' C C3' S N N 0 -0.637 1.076 -6.988
5 C4 C C4 N Y N 0 -4.752 -1.279 -6.51
6 C4' C C4' R N N 0 -0.087 -0.104 -6.165
7 C5 C C5 N Y N 0 -5.706 -1.399 -5.485
8 C5' C C5' N N N 0 0.761 0.419 -5.004
9 C6 C C6 N Y N 0 -7.002 -1.817 -5.831
10 C8 C C8 N Y N 0 -3.855 -0.737 -4.57
11 CP1 C CP1 N N N 0 -0.977 0.338 9.251
12 CP2 C CP2 N N N 0 0.067 1.069 8.405
13 CP3 C CP3 N N N 0 1.861 0.506 6.855
14 CP4 C CP4 N N N 0 2.689 -0.5 6.099
15 CP5 C CP5 N N N 0 3.734 0.229 5.253
16 CP6 C CP6 N N N 0 5.527 -0.333 3.703
17 CP7 C CP7 R N N 0 6.408 -1.341 3.011
18 CP8 C CP8 N N N 0 6.535 -2.977 1.127
19 CP9 C CP9 N N N 0 4.502 -2.896 2.577
20 CPA C CPA N N N 0 5.606 -2.061 1.926
21 CPB C CPB N N N 0 4.977 -1.029 0.987
22 CS1 C CS1 N N N 0 -3.028 0.495 10.997
23 CS2 C CS2 N N N 0 -4.079 1.058 11.918
24 CS3 C CS3 N N N 0 -4.883 -0.086 12.537
25 CS4 C CS4 N N N 0 -5.934 0.476 13.458
26 H1' H H1' N N N 0 -2.209 -1.223 -7.454
27 H11 H 1H1 N N N 0 -1.625 -0.248 8.6
28 H12 H 2H1 N N N 0 -0.475 -0.322 9.957
29 H2 H H2 N N N 0 -6.584 -2.19 -9.059
30 H2' H H2' N N N 0 -2.609 1.523 -6.143
31 H21 H 1H2 N N N 0 0.715 1.656 9.056
32 H22 H 2H2 N N N 0 -0.434 1.73 7.699
33 H3' H H3' N N N 0 -0.344 2.024 -6.537
34 H4' H H4' N N N 0 0.515 -0.751 -6.802
35 H41 H 1H4 N N N 0 2.041 -1.088 5.448
36 H42 H 2H4 N N N 0 3.19 -1.162 6.805
37 H5'1 H 1H5' N N N 0 0.148 1.055 -4.365
38 H5'2 H 2H5' N N N 0 1.597 0.998 -5.398
39 H51 H 1H5 N N N 0 4.381 0.817 5.904
40 H52 H 2H5 N N N 0 3.232 0.89 4.547
41 H7 H H7 N N N 0 6.769 -2.068 3.739
42 H8 H H8 N N N 0 -3.139 -0.422 -3.826
43 H81 H 1H8 N N N 0 7.359 -2.392 0.719
44 H82 H 2H8 N N N 0 6.93 -3.754 1.782
45 H83 H 3H8 N N N 0 5.977 -3.438 0.312
46 H91 H 1H9 N N N 0 3.771 -2.234 3.042
47 H92 H 2H9 N N N 0 4.01 -3.504 1.818
48 H93 H 3H9 N N N 0 4.938 -3.546 3.336
49 HN1 H HN1 N N N 0 0.693 -0.858 7.77
50 HN2 H HN2 N N N 0 4.359 -1.697 4.618
51 HN61 H 1HN6 N N N 0 -8.876 -2.237 -5.117
52 HN62 H 2HN6 N N N 0 -7.783 -1.748 -3.938
53 HO2' H 'HO2 N N N 0 -3.714 0.955 -8.109
54 HO3 H HO3 N N N 0 7.16 -0.039 1.78
55 HO4 H HO4 N N N 0 -7.437 0.012 14.707
56 HOB H HOB N N N 0 0.499 0.334 -1.787
57 HOM H HOM N N N 0 5.33 -0.298 -2.137
58 HOW H HOW N N N 0 1.545 3.235 -10.316
59 HOX H HOX N N N 0 -1.193 3.469 -9.082
60 HPB1 H 1HPB N N N 0 4.315 -0.376 1.556
61 HPB2 H 2HPB N N N 0 5.764 -0.434 0.523
62 HS21 H 1HS2 N N N 0 -3.598 1.633 12.71
63 HS22 H 2HS2 N N N 0 -4.748 1.707 11.353
64 HS31 H 1HS3 N N N 0 -5.364 -0.661 11.746
65 HS32 H 2HS3 N N N 0 -4.214 -0.735 13.102
66 N1 N N1 N Y N 0 -7.262 -2.084 -7.107
67 N3 N N3 N Y N 0 -5.103 -1.574 -7.757
68 N6 N N6 N N N 0 -7.985 -1.947 -4.866
69 N7 N N7 N Y N 0 -5.095 -1.05 -4.328
70 N9 N N9 N Y N 0 -3.593 -0.866 -5.902
71 NP1 N NP1 N N N 0 0.872 0.089 7.67
72 NP2 N NP2 N N N 0 4.538 -0.749 4.518
73 O11 O O11 N N N 0 1.21 0.89 -2.136
74 O12 O O12 N N N 0 3.251 0.734 -3.612
75 O2' O O2' N N N 0 -2.775 1.174 -8.189
76 O21 O O21 N N N 0 2.722 0.319 -0.167
77 O22 O O22 N N N 0 4.784 0.311 -1.623
78 O3' O O3' N N N 0 -0.182 1.006 -8.341
79 O31 O O31 N N N 0 1.704 2.564 -7.724
80 O32 O O32 N N N 0 1.105 2.387 -10.17
81 O33 O O33 N N N 0 -0.468 3.616 -8.46
82 O4' O O4' N N N 0 -1.215 -0.835 -5.654
83 O5' O O5' N N N 0 1.26 -0.681 -4.243
84 O6 O O6 N N N 0 2.735 -1.251 -2.143
85 O7 O O7 N N N 0 4.227 -1.701 -0.026
86 OP1 O OP1 N N N 0 2.085 1.691 6.729
87 OP2 O OP2 N N N 0 5.708 0.852 3.525
88 OP3 O OP3 N N N 0 7.521 -0.672 2.415
89 OS1 O OS1 N N N 0 -2.931 -0.705 10.85
90 OS4 O OS4 N N N 0 -6.763 -0.349 14.116
91 OS5 O OS5 N N N 0 -6.03 1.672 13.605
92 P1 P P1 R N N 0 2.138 -0.059 -3.046
93 P2 P P2 R N N 0 3.598 -0.561 -0.972
94 P3 P P3 N N N 0 0.565 2.397 -8.653
95 S S S N N N 0 -1.971 1.548 10.159