Chemical Components in the PDB

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  • AHR (Stereoisomer)
  • BDR (Stereoisomer)
  • FUB (Stereoisomer)
  • 32O (Stereoisomer)
  • Z6J (Stereoisomer)
  • BXX (Stereoisomer)
  • XYZ (Stereoisomer)
  • BXY (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : RIB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5 O O5' N N N 0 -0.774 -0.372 3.102
2 C5 C C5' N N N 0 0.124 0.364 2.271
3 C4 C C4' R N N 0 0.184 -0.281 0.885
4 O4 O O4' N N N 0 -1.11 -0.245 0.276
5 C3 C C3' S N N 0 1.151 0.511 -0.02
6 O3 O O3' N N N 0 2.419 -0.141 -0.116
7 C2 C C2' R N N 0 0.412 0.487 -1.387
8 O2 O O2' N N N 0 0.687 -0.72 -2.1
9 C1 C C1' S N N 0 -1.065 0.539 -0.925
10 O1 O O1' N N Y 0 -1.918 -0.028 -1.921
11 HO5 H HO5' N N Y 0 -0.783 0.067 3.963
12 H51 H H5'1 N N N 0 -0.225 1.392 2.178
13 H52 H H5'2 N N N 0 1.119 0.359 2.718
14 H4 H H4' N N N 0 0.523 -1.313 0.973
15 H3 H H3' N N N 0 1.269 1.533 0.339
16 HO3 H HO3' N N Y 0 2.94 0.354 -0.763
17 H2 H H2' N N N 0 0.667 1.361 -1.987
18 HO2 H HO2' N N Y 0 0.116 -0.72 -2.88
19 H1 H H1' N N N 0 -1.36 1.568 -0.717
20 HO1 H HO1' N N Y 0 -2.816 -0.0090 -1.563