Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RAD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 147


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 2.592 -1.094 -1.436
2 O1 O O1 N N N 0 1.89 -2.099 -1.985
3 O2 O O2 N N N 0 2.451 -0.782 -0.282
4 C2 C C2 S N N 0 3.587 -0.387 -2.317
5 C3 C C3 N N N 0 4.854 -1.25 -2.42
6 C4 C C4 N N N 0 5.868 -0.597 -3.349
7 C5 C C5 N N N 0 6.029 0.891 -3.076
8 C6 C C6 N N N 0 5.384 1.294 -1.754
9 N7 N N7 N N N 0 3.939 0.939 -1.821
10 C8 C C8 N N N 0 3.303 3.301 -1.409
11 O3 O O3 N N N 0 1.986 1.481 -1.031
12 C9 C C9 R N N 0 3.198 4.285 -0.311
13 O4 O O4 N N N 0 3.622 3.763 -2.492
14 C10 C C10 R N N 0 3.874 5.6 -0.735
15 O5 O O5 N N N 0 1.832 4.563 0.049
16 O6 O O6 N N N 0 3.867 3.788 0.858
17 C11 C C11 N N N 0 2.82 6.669 -1.012
18 C12 C C12 N N N 0 1.987 6.964 0.24
19 C13 C C13 S N N 0 1.73 5.652 0.978
20 C14 C C14 N N N 0 0.423 5.645 1.741
21 C15 C C15 S N N 0 -0.799 5.918 0.872
22 C16 C C16 N N N 0 -2.005 5.303 1.553
23 O7 O O7 N N N 0 -1.014 7.329 0.759
24 C17 C C17 N N N 0 -2.772 4.43 0.911
25 C18 C C18 N N N 0 -3.934 3.815 1.551
26 C19 C C19 N N N 0 -4.749 3.001 0.846
27 C20 C C20 N N N 0 -5.899 2.383 1.513
28 C23 C C23 N N N 0 -8.177 -0.417 0.891
29 C21 C C21 N N N 0 -6.725 1.596 0.827
30 C22 C C22 S N N 0 -7.903 0.954 1.513
31 C24 C C24 R N N 0 -6.926 -1.291 0.965
32 C25 C C25 N N N 0 -6.956 -2.302 -0.155
33 C26 C C26 R N N 0 -5.665 -2.795 -0.756
34 O8 O O8 N N N 0 -8.013 -2.71 -0.571
35 C27 C C27 R N N 0 -5.707 -4.316 -0.906
36 O9 O O9 N N N 0 -5.482 -2.194 -2.041
37 C28 C C28 N N N 0 -4.297 -4.861 -0.876
38 O10 O O10 N N N 0 -6.451 -4.887 0.171
39 C29 C C29 N N N 0 -3.513 -4.642 -1.896
40 C30 C C30 R N N 0 -2.093 -5.133 -1.966
41 C31 C C31 N N N 0 -1.169 -4.083 -1.403
42 C32 C C32 N N N 0 0.13 -3.756 -2.09
43 O11 O O11 N N N 0 -1.479 -3.499 -0.391
44 C33 C C33 S N N 0 1.016 -2.911 -1.167
45 C34 C C34 R N N 0 1.857 -3.85 -0.293
46 C35 C C35 N N N 0 2.884 -3.032 0.492
47 C36 C C36 S N N 0 3.858 -3.979 1.197
48 C37 C C37 N N N 0 5.225 -3.304 1.323
49 C38 C C38 R N N 0 6.199 -4.25 2.028
50 C39 C C39 R N N 0 5.665 -4.585 3.422
51 O12 O O12 N N N 0 7.475 -3.619 2.145
52 C40 C C40 N N N 0 4.298 -5.26 3.296
53 O13 O O13 N N N 0 6.574 -5.469 4.08
54 C41 C C41 N N N 0 3.324 -4.314 2.592
55 C42 C C42 N N N 0 4.847 6.07 0.346
56 C43 C C43 N N N 0 -2.32 5.719 2.969
57 C44 C C44 N N N 0 -9.137 1.844 1.344
58 C45 C C45 N N N 0 -6.893 -2.023 2.308
59 C46 C C46 N N N 0 -3.84 -5.643 0.327
60 C47 C C47 N N N 0 -1.737 -5.397 -3.435
61 C48 C C48 N N N 0 0.943 -4.593 0.683
62 C49 C C49 N N N 0 -1.625 7.727 -0.47
63 C50 C C50 N N N 0 -4.77 -0.955 -2.007
64 C51 C C51 N N N 0 8.577 -4.53 2.135
65 C52 C C52 N N N 0 -1.805 9.247 -0.481
66 C7 C C7 N N N 0 3.076 1.861 -1.419
67 H2 H H2 N N N 0 3.156 -0.285 -3.32
68 H31 H 1H3 N N N 0 5.292 -1.367 -1.429
69 H32 H 2H3 N N N 0 4.586 -2.231 -2.812
70 H41 H 1H4 N N N 0 6.834 -1.084 -3.216
71 H42 H 2H4 N N N 0 5.541 -0.733 -4.379
72 H51 H 1H5 N N N 0 7.091 1.132 -3.043
73 H52 H 2H5 N N N 0 5.56 1.451 -3.884
74 H61 H 1H6 N N N 0 5.85 0.749 -0.934
75 H62 H 2H6 N N N 0 5.492 2.364 -1.598
76 H10 H H10 N N N 0 4.447 5.425 -1.654
77 HO6 H HO6 N N N 0 3.509 2.954 1.191
78 H111 H 1H11 N N N 0 3.314 7.589 -1.34
79 H112 H 2H11 N N N 0 2.158 6.329 -1.813
80 H121 H 1H12 N N N 0 2.521 7.661 0.888
81 H122 H 2H12 N N N 0 1.04 7.418 -0.062
82 H13 H H13 N N N 0 2.544 5.531 1.72
83 H141 H 1H14 N N N 0 0.304 4.669 2.222
84 H142 H 2H14 N N N 0 0.476 6.404 2.527
85 H15 H H15 N N N 0 -0.671 5.481 -0.114
86 H17 H H17 N N N 0 -2.532 4.165 -0.113
87 H18 H H18 N N N 0 -4.162 3.991 2.592
88 H19 H H19 N N N 0 -4.558 2.809 -0.197
89 H20 H H20 N N N 0 -6.069 2.57 2.564
90 H21 H H21 N N N 0 -6.553 1.417 -0.226
91 H22 H H22 N N N 0 -7.685 0.838 2.574
92 H231 H 1H23 N N N 0 -8.989 -0.904 1.434
93 H232 H 2H23 N N N 0 -8.47 -0.29 -0.152
94 H24 H H24 N N N 0 -6.037 -0.67 0.868
95 H26 H H26 N N N 0 -4.833 -2.516 -0.108
96 H27 H H27 N N N 0 -6.173 -4.578 -1.854
97 HOA H HOA N N N 0 -6.516 -5.851 0.136
98 H29 H H29 N N N 0 -3.908 -4.075 -2.738
99 H30 H H30 N N N 0 -1.973 -6.061 -1.412
100 H321 H 1H32 N N N 0 0.663 -4.674 -2.336
101 H322 H 2H32 N N N 0 -0.065 -3.189 -3.001
102 H33 H H33 N N N 0 0.398 -2.278 -0.537
103 H34 H H34 N N N 0 2.374 -4.57 -0.928
104 H351 H 1H35 N N N 0 3.436 -2.388 -0.192
105 H352 H 2H35 N N N 0 2.371 -2.42 1.234
106 H36 H H36 N N N 0 3.958 -4.896 0.617
107 H371 H 1H37 N N N 0 5.605 -3.065 0.329
108 H372 H 2H37 N N N 0 5.125 -2.386 1.903
109 H38 H H38 N N N 0 6.298 -5.167 1.447
110 H39 H H39 N N N 0 5.565 -3.668 4.003
111 H401 H 1H40 N N N 0 4.398 -6.177 2.716
112 H402 H 2H40 N N N 0 3.918 -5.499 4.29
113 HOD H HOD N N N 0 6.299 -5.724 4.972
114 H411 H 1H41 N N N 0 3.224 -3.397 3.172
115 H432 H 2H43 N N N 0 -2.805 4.894 3.49
116 H412 H 2H41 N N N 0 2.35 -4.795 2.502
117 H421 H 1H42 N N N 0 5.614 5.31 0.5
118 H422 H 2H42 N N N 0 5.318 7.002 0.031
119 H423 H 3H42 N N N 0 4.305 6.233 1.277
120 H431 H 1H43 N N N 0 -2.986 6.582 2.955
121 H433 H 3H43 N N N 0 -1.396 5.981 3.484
122 H441 H 1H44 N N N 0 -9.355 1.965 0.282
123 H442 H 2H44 N N N 0 -9.99 1.381 1.839
124 H443 H 3H44 N N N 0 -8.944 2.821 1.788
125 H451 H 1H45 N N N 0 -7.78 -2.65 2.401
126 H452 H 2H45 N N N 0 -6.001 -2.647 2.361
127 H453 H 3H45 N N N 0 -6.876 -1.295 3.119
128 H461 H 1H46 N N N 0 -4.056 -6.701 0.176
129 H462 H 2H46 N N N 0 -2.767 -5.507 0.462
130 H463 H 3H46 N N N 0 -4.366 -5.287 1.213
131 H471 H 1H47 N N N 0 -1.838 -4.473 -4.005
132 H472 H 2H47 N N N 0 -0.709 -5.753 -3.502
133 H473 H 3H47 N N N 0 -2.411 -6.15 -3.843
134 H481 H 1H48 N N N 0 0.032 -4.897 0.167
135 H482 H 2H48 N N N 0 1.457 -5.476 1.062
136 H483 H 3H48 N N N 0 0.688 -3.936 1.514
137 H491 H 1H49 N N N 0 -0.989 7.431 -1.304
138 H492 H 2H49 N N N 0 -2.598 7.245 -0.565
139 H501 H 1H50 N N N 0 -4.674 -0.564 -3.02
140 H502 H 2H50 N N N 0 -5.315 -0.239 -1.392
141 H503 H 3H50 N N N 0 -3.779 -1.118 -1.585
142 H511 H 1H51 N N N 0 8.482 -5.223 2.971
143 H512 H 2H51 N N N 0 8.578 -5.088 1.199
144 H513 H 3H51 N N N 0 9.509 -3.973 2.228
145 H521 H 1H52 N N N 0 -2.441 9.543 0.353
146 H522 H 2H52 N N N 0 -0.832 9.729 -0.385
147 H523 H 3H52 N N N 0 -2.271 9.55 -1.418