Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : R1P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5' C C5' N N N 0 1.695 -0.423 2.674
2 O5' O O5' N N N 0 2.859 0.374 2.453
3 C4' C C4' R N N 0 0.473 0.283 2.084
4 O4' O O4' N N N 0 0.639 0.442 0.67
5 C1' C C1' R N N 0 -0.389 -0.276 -0.028
6 C2' C C2' R N N 0 -1.562 -0.385 0.978
7 O2' O O2' N N N 0 -2.337 0.815 0.997
8 C3' C C3' S N N 0 -0.789 -0.574 2.314
9 O3' O O3' N N N 0 -1.553 -0.081 3.417
10 O1' O O1' N N N 0 -0.796 0.446 -1.191
11 P P P N N N 0 0.118 -0.076 -2.408
12 O1P O O1P N N N 0 -0.089 -1.529 -2.593
13 O2P O O2P N N N 0 -0.289 0.7 -3.758
14 O3P O O3P N N N 0 1.668 0.206 -2.074
15 H5'1 H 1H5' N N N 0 1.822 -1.392 2.192
16 H5'2 H 2H5' N N N 0 1.55 -0.566 3.745
17 HO5' H 'HO5 N N N 0 3.605 -0.105 2.839
18 H4' H H4' N N N 0 0.348 1.259 2.554
19 H1' H H1' N N N 0 -0.035 -1.269 -0.305
20 H2' H H2' N N N 0 -2.188 -1.25 0.76
21 HO2' H 'HO2 N N N 0 -2.698 0.928 0.108
22 H3' H H3' N N N 0 -0.524 -1.62 2.464
23 HO3' H 'HO3 N N N 0 -2.366 -0.603 3.448
24 HOP2 H 2HOP N N N 0 0.281 0.359 -4.46
25 HOP3 H 3HOP N N N 0 1.76 1.161 -1.961