Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PM9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 2.392 -0.658 -0.159
2 C C C N N N 0 4.555 0.271 -0.311
3 O2 O O2 N N N 0 5.268 1.233 -0.544
4 CB C CB N N N 0 2.551 1.705 -0.812
5 CG C CG N N N 0 2.152 2.482 0.444
6 SD S SD N N N 0 1.41 4.067 -0.036
7 CE C CE N N N 0 1.01 4.83 1.561
8 O1 O O1 N N N 0 5.109 -0.91 0.047
9 C2 C C2 N N N 0 -0.009 -4.014 0.286
10 C2A C C2A N N N 0 0.576 -5.395 0.435
11 C3 C C3 N N N 0 0.817 -2.946 0.143
12 C4 C C4 N N N 0 0.254 -1.652 0.003
13 C4A C C4A N N N 0 1.082 -0.519 -0.147
14 C5 C C5 N N N 0 -1.153 -1.52 0.018
15 C5A C C5A N N N 0 -1.792 -0.163 -0.128
16 C6 C C6 N N N 0 -1.921 -2.625 0.163
17 N1 N N1 N N N 0 -1.357 -3.85 0.289
18 O1P O O1P N N N 0 -3.925 1.699 -1.453
19 O3P O O3P N N N 0 -4.023 1.928 1.059
20 O3 O O3 N N N 0 2.166 -3.114 0.135
21 O2P O O2P N N N 0 -5.737 0.421 -0.247
22 O4P O O4P N N N 0 -3.214 -0.298 -0.082
23 CA C CA N N N 0 3.168 0.389 -0.413
24 P P P N N N 0 -4.218 0.954 -0.208
25 H4 H H4 N N N 0 0.642 0.461 -0.253
26 H1 H H1 N N N 0 6.075 -0.895 0.091
27 HBC1 H 1HBC N N N 0 1.667 1.522 -1.422
28 HBC2 H 2HBC N N N 0 3.274 2.286 -1.385
29 HGC2 H 2HGC N N N 0 3.037 2.666 1.054
30 HGC1 H 1HGC N N N 0 1.43 1.901 1.017
31 HEC1 H 1HEC N N N 0 0.316 4.19 2.105
32 HEC2 H 2HEC N N N 0 1.923 4.954 2.143
33 HEC3 H 3HEC N N N 0 0.55 5.804 1.393
34 H2A1 H 1H2A N N N 0 0.738 -5.609 1.491
35 H2A2 H 2H2A N N N 0 -0.114 -6.129 0.018
36 H2A3 H 3H2A N N N 0 1.526 -5.447 -0.097
37 H3 H H3 N N N 0 2.448 -4.034 0.237
38 H5A1 H 1H5A N N N 0 -1.462 0.483 0.685
39 H5A2 H 2H5A N N N 0 -1.5 0.276 -1.082
40 H6 H H6 N N N 0 -2.997 -2.529 0.175
41 H3P H H3P N N N 0 -4.199 1.505 1.911
42 H2P H H2P N N N 0 -6.398 1.123 -0.322
43 HN H HN N N N 0 -1.929 -4.628 0.388