Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PLC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 107


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -2.77 1.955 -0.961
2 C2 C C2 R N N 0 -1.545 2.816 -1.278
3 C3 C C3 N N N 0 -0.939 3.341 0.024
4 C4 C C4 N N N 0 -4.552 -1.986 1.302
5 C5 C C5 N N N 0 -4.269 -3.207 2.18
6 C6 C C6 N N N 0 -3.469 -2.301 4.926
7 C7 C C7 N N N 0 -4.544 -3.955 4.146
8 C8 C C8 N N N 0 -2.424 -2.826 3.156
9 C' C C' N N N 0 -0.582 1.949 -3.323
10 C1' C C1' N N N 0 0.44 1.117 -4.053
11 C2' C C2' N N N 0 0.194 1.213 -5.56
12 C3' C C3' N N N 0 1.233 0.369 -6.301
13 C4' C C4' N N N 0 0.986 0.466 -7.808
14 C5' C C5' N N N 0 2.025 -0.378 -8.55
15 C6' C C6' N N N 0 1.778 -0.281 -10.057
16 C7' C C7' N N N 0 2.817 -1.126 -10.798
17 C8' C C8' N N N 0 2.571 -1.029 -12.305
18 C9' C C9' N N N 0 3.609 -1.874 -13.047
19 CA' C 'C10 N N N 0 3.363 -1.777 -14.554
20 CB' C 'C11 N N N 0 4.401 -2.622 -15.295
21 CB C C" N N N 0 0.018 2.444 2.057
22 C1B C C1" N N N 0 0.432 1.282 2.923
23 C2B C C2" N N N 0 1.038 1.807 4.226
24 C3B C C3" N N N 0 1.458 0.628 5.105
25 C4B C C4" N N N 0 2.064 1.153 6.408
26 C5B C C5" N N N 0 2.484 -0.026 7.288
27 C6B C C6" N N N 0 3.09 0.498 8.59
28 C7B C C7" N N N 0 3.51 -0.68 9.47
29 C8B C C8" N N N 0 4.116 -0.155 10.773
30 C9B C C9" N N N 0 4.536 -1.335 11.652
31 CAA C "C10 N N N 0 5.142 -0.81 12.955
32 CBA C "C11 N N N 0 5.562 -1.989 13.834
33 O' O O' N N N 0 -1.421 2.556 -3.944
34 OB O O" N N N 0 0.191 3.576 2.443
35 O2 O O2 N N N 0 -0.56 2.015 -1.982
36 O3 O O3 N N N 0 -0.541 2.221 0.858
37 O1P O O1P N N N 0 -4.28 -0.48 -1.125
38 O2P O O2P N N N 0 -4.785 0.919 0.913
39 O3P O O3P N N N 0 -2.377 0.853 -0.14
40 O4P O O4P N N N 0 -3.337 -1.268 1.078
41 N N N N N N 1 -3.869 -2.754 3.553
42 P P P R N N 0 -3.708 -0.004 0.153
43 H11 H 1H1 N N N 0 -3.509 2.557 -0.433
44 H12 H 2H1 N N N 0 -3.201 1.581 -1.889
45 H2 H H2 N N N 0 -1.844 3.656 -1.905
46 H31 H 1H3 N N N 0 -1.679 3.943 0.552
47 H32 H 2H3 N N N 0 -0.067 3.954 -0.202
48 H41 H 1H4 N N N 0 -5.27 -1.337 1.803
49 H42 H 2H4 N N N 0 -4.962 -2.313 0.347
50 H51 H 1H5 N N N 0 -5.166 -3.822 2.247
51 H52 H 2H5 N N N 0 -3.46 -3.791 1.74
52 H61 H 1H6 N N N 0 -2.91 -1.368 4.852
53 H62 H 2H6 N N N 0 -4.362 -2.142 5.53
54 H63 H 3H6 N N N 0 -2.845 -3.063 5.393
55 H71 H 1H7 N N N 0 -4.033 -4.243 5.065
56 H72 H 2H7 N N N 0 -4.507 -4.78 3.435
57 H73 H 3H7 N N N 0 -5.584 -3.714 4.369
58 H81 H 1H8 N N N 0 -1.856 -2.082 3.715
59 H82 H 2H8 N N N 0 -2.036 -3.82 3.376
60 H83 H 3H8 N N N 0 -2.331 -2.626 2.088
61 H1'1 H 1H1' N N N 0 1.44 1.487 -3.824
62 H1'2 H 2H1' N N N 0 0.356 0.077 -3.737
63 H2'1 H 1H2' N N N 0 -0.804 0.844 -5.789
64 H2'2 H 2H2' N N N 0 0.278 2.253 -5.876
65 H3'1 H 1H3' N N N 0 2.232 0.739 -6.072
66 H3'2 H 2H3' N N N 0 1.148 -0.67 -5.985
67 H4'1 H 1H4' N N N 0 -0.012 0.096 -8.038
68 H4'2 H 2H4' N N N 0 1.071 1.505 -8.124
69 H5'1 H 1H5' N N N 0 3.024 -0.008 -8.321
70 H5'2 H 2H5' N N N 0 1.94 -1.418 -8.234
71 H6'1 H 1H6' N N N 0 0.779 -0.651 -10.286
72 H6'2 H 2H6' N N N 0 1.863 0.757 -10.373
73 H7'1 H 1H7' N N N 0 2.733 -2.166 -10.482
74 H7'2 H 2H7' N N N 0 3.816 -0.756 -10.569
75 H8'1 H 1H8' N N N 0 1.571 -1.399 -12.534
76 H8'2 H 2H8' N N N 0 2.655 0.009 -12.621
77 H9'1 H 1H9' N N N 0 4.609 -1.504 -12.817
78 H9'2 H 2H9' N N N 0 3.525 -2.913 -12.731
79 HT'1 H 1HT' N N N 0 2.363 -2.147 -14.783
80 HT'2 H 2HT' N N N 0 3.447 -0.738 -14.87
81 HE'1 H 1HE' N N N 0 4.226 -2.553 -16.369
82 HE'2 H 2HE' N N N 0 5.401 -2.252 -15.066
83 HE'3 H 3HE' N N N 0 4.317 -3.661 -14.979
84 H1A1 H 1H1" N N N 0 1.172 0.681 2.395
85 H1A2 H 2H1" N N N 0 -0.439 0.669 3.15
86 H2A1 H 1H2" N N N 0 0.298 2.409 4.755
87 H2A2 H 2H2" N N N 0 1.91 2.421 4.0
88 H3A1 H 1H3" N N N 0 2.198 0.026 4.577
89 H3A2 H 2H3" N N N 0 0.586 0.015 5.332
90 H4A1 H 1H4" N N N 0 1.324 1.754 6.937
91 H4A2 H 2H4" N N N 0 2.936 1.766 6.182
92 H5A1 H 1H5" N N N 0 3.224 -0.627 6.759
93 H5A2 H 2H5" N N N 0 1.612 -0.639 7.514
94 H6A1 H 1H6" N N N 0 2.35 1.1 9.119
95 H6A2 H 2H6" N N N 0 3.962 1.112 8.364
96 H7A1 H 1H7" N N N 0 4.25 -1.282 8.941
97 H7A2 H 2H7" N N N 0 2.638 -1.293 9.696
98 H8A1 H 1H8" N N N 0 3.376 0.446 11.301
99 H8A2 H 2H8" N N N 0 4.988 0.457 10.546
100 H9A1 H 1H9" N N N 0 5.276 -1.936 11.123
101 H9A2 H 2H9" N N N 0 3.664 -1.948 11.878
102 HTA1 H 1HT" N N N 0 4.402 -0.208 13.483
103 HTA2 H 2HT" N N N 0 6.014 -0.196 12.728
104 HEA1 H 1HE" N N N 0 6.302 -2.591 13.305
105 HEA2 H 2HE" N N N 0 4.69 -2.602 14.06
106 HEA3 H 3HE" N N N 0 5.994 -1.615 14.762
107 HOP2 H 2HOP N N N 0 -4.373 1.207 1.739