Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P6P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 3.341 -0.242 0.095
2 C1 C C1 N N N 0 -3.294 -1.52 0.517
3 O1 O O1 N N N 0 -2.954 -2.829 0.057
4 C2 C C2 S N N 0 -2.503 -0.478 -0.277
5 O2 O O2 N N Y 0 -2.798 -0.588 -1.671
6 C3 C C3 S N N 0 -2.826 0.945 0.23
7 O3 O O3 N N N 0 -3.292 0.901 1.581
8 C4 C C4 S N N 0 -1.475 1.69 0.145
9 O4 O O4 N N N 0 -1.57 2.796 -0.754
10 C5 C C5 R N N 0 -0.496 0.629 -0.405
11 O5 O O5 N N N 0 -1.086 -0.641 -0.049
12 C6 C C6 N N N 0 0.878 0.781 0.252
13 O6 O O6 N N N 0 1.798 -0.13 -0.351
14 O1P O O1P N N N 0 4.043 -1.453 -0.701
15 O2P O O2P N N N 0 4.1 1.136 -0.247
16 O3P O O3P N N N 0 3.416 -0.499 1.55
17 H11 H H1 N N N 0 -4.361 -1.351 0.375
18 H12 H H1A N N N 0 -3.049 -1.432 1.576
19 HO1 H HO1 N N Y 0 -3.419 -3.541 0.517
20 HO2 H HO2 N N Y 0 -2.592 -1.454 -2.05
21 H3 H H3 N N N 0 -3.566 1.42 -0.413
22 HO3 H HO3 N N Y 0 -3.51 1.767 1.95
23 H4 H H4 N N N 0 -1.161 2.025 1.133
24 HO4 H HO4 N N Y 0 -2.217 3.465 -0.488
25 H5 H H5 N N N 0 -0.41 0.717 -1.488
26 H61 H H6 N N N 0 1.234 1.802 0.116
27 H62 H H6A N N N 0 0.797 0.564 1.317
28 HO1P H HO1P N N N 0 4.977 -1.579 -0.481
29 HO2P H HO2P N N N 0 4.09 1.368 -1.186