Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P06

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.333 -3.488 -0.295
2 C12 C C12 N Y N 0 2.9 -0.902 0.059
3 C14 C C14 N Y N 0 4.364 1.075 0.218
4 C16 C C16 N Y N 0 2.382 0.277 -0.422
5 C17 C C17 N N N 0 5.43 2.121 0.421
6 C18 C C18 N N N 0 6.659 1.478 1.067
7 C2 C C2 N Y N 0 2.22 -2.21 0.071
8 C22 C C22 N N N 0 5.82 2.722 -0.931
9 C26 C C26 N N N 0 4.893 3.225 1.334
10 C30 C C30 N Y N 0 1.027 0.389 -1.01
11 C31 C C31 N Y N 0 -1.172 1.367 -1.016
12 C32 C C32 N Y N 0 0.096 1.268 -0.459
13 C33 C C33 N Y N 0 -1.508 0.592 -2.119
14 C35 C C35 N Y N 0 0.681 -0.381 -2.121
15 C37 C C37 N Y N 0 -0.582 -0.275 -2.668
16 C4 C C4 N Y N 0 2.903 -3.364 0.479
17 C43 C C43 N Y N 0 -3.853 0.352 0.506
18 C44 C C44 N Y N 0 -4.166 -0.748 2.613
19 C46 C C46 N Y N 0 -4.056 0.418 1.873
20 C47 C C47 N Y N 0 -4.073 -1.976 1.986
21 C49 C C49 N Y N 0 -3.766 -0.878 -0.122
22 C50 C C50 N Y N 0 -3.875 -2.043 0.62
23 C7 C C7 N Y N 0 2.222 -4.566 0.477
24 F39 F F39 N N N 0 0.426 2.021 0.613
25 F52 F F52 N N N 0 -3.573 -0.944 -1.457
26 F53 F F53 N N N 0 -4.147 1.618 2.486
27 H1 H H1 N N N 0 3.936 -3.314 0.789
28 H10 H H10 N N N 0 6.203 1.935 -1.581
29 H11 H H11 N N N 0 4.615 2.797 2.297
30 H12 H H12 N N N 0 5.663 3.982 1.481
31 H13 H H13 N N N 0 4.017 3.683 0.873
32 H14 H H14 N N N 0 -2.495 0.67 -2.551
33 H15 H H15 N N N 0 1.401 -1.06 -2.553
34 H16 H H16 N N N 0 -0.849 -0.876 -3.525
35 H17 H H17 N N N 0 -1.823 3.1 -0.105
36 H18 H H18 N N N 0 -4.324 -0.697 3.68
37 H19 H H19 N N N 0 -4.158 -2.884 2.564
38 H2 H H2 N N N 0 2.717 -5.473 0.789
39 H20 H H20 N N N 0 -3.803 -3.003 0.131
40 H3 H H3 N N N 0 -1.48 -2.752 -0.902
41 H4 H H4 N N N 0 -1.429 -4.425 -0.758
42 H5 H H5 N N N 0 7.041 0.691 0.417
43 H6 H H6 N N N 0 7.429 2.235 1.215
44 H7 H H7 N N N 0 6.38 1.05 2.031
45 H8 H H8 N N N 0 4.944 3.18 -1.391
46 H9 H H9 N N N 0 6.591 3.478 -0.783
47 N15 N N15 N Y N 0 3.208 1.301 -0.306
48 N3 N N3 N Y N 0 0.944 -2.314 -0.305
49 N40 N N40 N N N 0 -2.111 2.247 -0.468
50 N6 N N6 N Y N 0 0.955 -4.593 0.09
51 N9 N N9 N N N 0 -0.991 -3.562 -0.691
52 O54 O O54 N N N 0 -4.376 2.847 0.308
53 O55 O O55 N N N 0 -4.067 1.496 -1.771
54 S13 S S13 N Y N 0 4.526 -0.57 0.65
55 S42 S S42 N N N 0 -3.714 1.834 -0.437