Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ONK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 86


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C27 C C27 N N N 0 5.973 -0.565 0.246
2 C1 C C1 N N N 0 4.659 -1.167 -0.181
3 O1 O O1 N N N 0 4.613 -1.901 -1.145
4 C28 C C28 N N N 0 7.081 -1.037 -0.697
5 C29 C C29 N N N 0 8.415 -0.426 -0.264
6 C30 C C30 N N N 0 9.523 -0.898 -1.207
7 C31 C C31 N N N 0 10.857 -0.286 -0.774
8 N1 N N1 N N N 0 3.535 -0.889 0.509
9 C2 C C2 S N N 0 2.257 -1.474 0.093
10 C5 C C5 N N N 0 1.126 -0.598 0.567
11 O3 O O3 N N N 0 1.272 0.105 1.544
12 C3 C C3 N N N 0 2.113 -2.869 0.705
13 C4 C C4 N N N 0 0.789 -3.49 0.253
14 C26 C C26 N N N 0 2.131 -2.761 2.231
15 C10 C C10 N N N 0 -2.467 -0.41 -0.079
16 O7 O O7 N N N 0 -0.529 4.147 -0.738
17 C9 C C9 N N N 0 0.306 3.699 0.019
18 C8 C C8 N N N 0 0.191 2.279 0.512
19 N2 N N2 N N N 0 -0.048 -0.597 -0.096
20 N5 N N5 N N N 0 1.334 4.471 0.423
21 C24 C C24 N N N 0 1.442 5.853 -0.052
22 C25 C C25 N N N 0 2.342 3.929 1.337
23 C6 C C6 S N N 0 -1.174 0.189 0.412
24 C7 C C7 N N N 0 -1.058 1.63 -0.088
25 O2 O O2 N N N 0 -2.449 -1.396 -0.784
26 N3 N N3 N N N 0 -3.643 0.151 0.265
27 C11 C C11 S N N 0 -4.9 -0.432 -0.212
28 C16 C C16 S N N 0 -5.216 0.112 -1.607
29 O6 O O6 N N N 0 -4.16 -0.235 -2.504
30 C17 C C17 N N N 0 -6.509 -0.488 -2.098
31 C23 C C23 N N N 0 -6.602 -1.969 -2.359
32 C18 C C18 N N N 0 -7.552 0.279 -2.298
33 C12 C C12 N N N 0 -6.031 -0.061 0.749
34 C13 C C13 N N N 0 -5.76 -0.682 2.121
35 C15 C C15 N N N 0 -6.822 -0.208 3.114
36 C14 C C14 N N N 0 -5.809 -2.207 2.01
37 H40 H H40 N N N 0 5.903 0.523 0.21
38 H43 H H43 N N N 0 6.85 -0.721 -1.715
39 H41 H H41 N N N 0 6.203 -0.88 1.264
40 H42 H H42 N N N 0 7.15 -2.124 -0.661
41 H44 H H44 N N N 0 8.345 0.662 -0.3
42 H45 H H45 N N N 0 8.645 -0.741 0.754
43 H46 H H46 N N N 0 9.592 -1.985 -1.171
44 H47 H H47 N N N 0 9.292 -0.582 -2.225
45 H48 H H48 N N N 0 10.787 0.801 -0.81
46 H49 H H49 N N N 0 11.087 -0.602 0.244
47 H50 H H50 N N N 0 11.646 -0.623 -1.446
48 H39 H H39 N N N 0 3.571 -0.302 1.28
49 H31 H H31 N N N 0 2.228 -1.549 -0.994
50 H32 H H32 N N N 0 2.94 -3.498 0.375
51 H36 H H36 N N N 0 0.688 -4.485 0.685
52 H37 H H37 N N N 0 -0.038 -2.863 0.586
53 H38 H H38 N N N 0 0.775 -3.562 -0.835
54 H33 H H33 N N N 0 1.303 -2.133 2.56
55 H34 H H34 N N N 0 2.027 -3.755 2.667
56 H35 H H35 N N N 0 3.073 -2.319 2.553
57 H7 H H7 N N N 0 1.074 1.717 0.208
58 H8 H H8 N N N 0 0.115 2.277 1.599
59 H30 H H30 N N N 0 -0.146 -1.116 -0.909
60 H4 H H4 N N N 0 0.608 6.075 -0.718
61 H5 H H5 N N N 0 1.418 6.533 0.8
62 H6 H H6 N N N 0 2.381 5.979 -0.591
63 H1 H H1 N N N 0 2.037 4.114 2.366
64 H2 H H2 N N N 0 2.441 2.856 1.174
65 H3 H H3 N N N 0 3.3 4.415 1.149
66 H11 H H11 N N N 0 -1.161 0.181 1.502
67 H9 H H9 N N N 0 -1.941 2.193 0.215
68 H10 H H10 N N N 0 -0.982 1.632 -1.176
69 H12 H H12 N N N 0 -3.658 0.94 0.829
70 H13 H H13 N N N 0 -4.803 -1.517 -0.258
71 H14 H H14 N N N 0 -5.313 1.196 -1.561
72 H15 H H15 N N N 0 -3.296 0.118 -2.25
73 H16 H H16 N N N 0 -7.605 -2.215 -2.706
74 H17 H H17 N N N 0 -5.875 -2.25 -3.122
75 H18 H H18 N N N 0 -6.391 -2.514 -1.439
76 H19 H H19 N N N 0 -8.479 -0.15 -2.65
77 H20 H H20 N N N 0 -7.486 1.341 -2.111
78 H21 H H21 N N N 0 -6.086 1.023 0.845
79 H22 H H22 N N N 0 -6.977 -0.44 0.36
80 H23 H H23 N N N 0 -4.773 -0.375 2.469
81 H24 H H24 N N N 0 -7.798 -0.585 2.81
82 H25 H H25 N N N 0 -6.582 -0.582 4.109
83 H26 H H26 N N N 0 -6.843 0.882 3.132
84 H27 H H27 N N N 0 -5.052 -2.544 1.302
85 H28 H H28 N N N 0 -5.615 -2.649 2.987
86 H29 H H29 N N N 0 -6.795 -2.514 1.661