Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NOG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.628 0.05 2.877
2 C2 C C2 N N N 0 1.578 -0.243 4.376
3 C3 C C3 N N N 0 0.302 0.371 4.917
4 C4 C C4 N N N 0 -0.931 0.06 4.188
5 C5 C C5 N N N 0 -0.872 -0.338 2.918
6 C6 C C6 N N N 0 -2.179 -0.662 2.219
7 C7 C C7 N N N 0 -2.207 0.064 0.873
8 C8 C C8 R N N 0 -0.965 -0.323 0.067
9 C9 C C9 S N N 0 0.285 0.198 0.789
10 C10 C C10 R N N 0 0.393 -0.492 2.155
11 C11 C C11 N N N 0 1.556 -0.072 -0.009
12 C12 C C12 N N N 0 1.459 0.485 -1.438
13 C13 C C13 S N N 0 0.245 -0.151 -2.084
14 C14 C C14 S N N 0 -1.002 0.346 -1.307
15 C15 C C15 N N N 0 -2.15 -0.091 -2.225
16 C16 C C16 N N N 0 -1.609 0.243 -3.642
17 C17 C C17 R N N 0 -0.053 0.251 -3.524
18 C18 C C18 N N N 0 0.344 -1.674 -1.983
19 C19 C C19 N N N 0 1.683 -2.138 -2.561
20 C20 C C20 N N N 0 0.471 1.601 -3.784
21 C21 C C21 N N N 0 0.89 2.678 -3.992
22 O3 O O3 N N N 0 0.302 1.081 5.9
23 O17 O O17 N N N 0 0.517 -0.687 -4.438
24 HC11 H 1HC1 N N N 0 1.68 1.128 2.728
25 HC12 H 2HC1 N N N 0 2.522 -0.408 2.455
26 HC21 H 1HC2 N N N 0 2.442 0.201 4.869
27 HC22 H 2HC2 N N N 0 1.57 -1.32 4.542
28 HC4 H HC4 N N N 0 -1.888 0.155 4.68
29 HC61 H 1HC6 N N N 0 -3.015 -0.328 2.833
30 HC62 H 2HC6 N N N 0 -2.25 -1.738 2.055
31 HC71 H 1HC7 N N N 0 -2.211 1.141 1.041
32 HC72 H 2HC7 N N N 0 -3.103 -0.222 0.322
33 HC8 H HC8 N N N 0 -0.911 -1.407 -0.032
34 HC9 H HC9 N N N 0 0.184 1.272 0.942
35 H10C H CH10 N N N 0 0.543 -1.558 1.983
36 H111 H 1H11 N N N 0 1.722 -1.148 -0.058
37 H112 H 2H11 N N N 0 2.401 0.393 0.498
38 H121 H 1H12 N N N 0 2.357 0.227 -1.999
39 H122 H 2H12 N N N 0 1.338 1.568 -1.406
40 H14C H CH14 N N N 0 -0.991 1.43 -1.202
41 H151 H 1H15 N N N 0 -2.336 -1.16 -2.127
42 H152 H 2H15 N N N 0 -3.053 0.48 -2.012
43 H161 H 1H16 N N N 0 -1.927 -0.518 -4.354
44 H162 H 2H16 N N N 0 -1.968 1.223 -3.958
45 H181 H 1H18 N N N 0 -0.47 -2.13 -2.545
46 H182 H 2H18 N N N 0 0.277 -1.974 -0.937
47 H191 H 1H19 N N N 0 1.807 -3.205 -2.379
48 H192 H 2H19 N N N 0 1.701 -1.947 -3.634
49 H193 H 3H19 N N N 0 2.495 -1.591 -2.081
50 H21C H CH21 N N N 0 1.265 3.641 -4.178
51 H17O H OH17 N N N 0 0.264 -0.401 -5.326