Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NIM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4 O O4 N N N -1 -1.674 4.113 0.136
2 N2 N N2 N N N 1 -1.929 2.922 0.149
3 O3 O O3 N N N 0 -3.077 2.547 0.308
4 C5 C C5 N Y N 0 -0.844 1.931 -0.029
5 C4 C C4 N Y N 0 0.458 2.359 -0.21
6 C3 C C3 N Y N 0 1.475 1.438 -0.376
7 C2 C C2 N Y N 0 1.19 0.081 -0.362
8 N1 N N1 N N N 0 2.218 -0.854 -0.53
9 S1 S S1 N N N 0 3.735 -0.529 0.051
10 O1 O O1 N N N 0 4.441 -1.731 -0.225
11 O2 O O2 N N N 0 4.059 0.7 -0.584
12 C1 C C1 N N N 0 3.458 -0.31 1.83
13 C6 C C6 N Y N 0 -1.136 0.58 -0.014
14 C7 C C7 N Y N 0 -0.123 -0.35 -0.186
15 O5 O O5 N N N 0 -0.408 -1.679 -0.171
16 C8 C C8 N Y N 0 -1.76 -1.79 -0.091
17 C13 C C13 N Y N 0 -2.54 -1.617 -1.225
18 C12 C C12 N Y N 0 -3.915 -1.73 -1.141
19 C11 C C11 N Y N 0 -4.513 -2.015 0.073
20 C10 C C10 N Y N 0 -3.738 -2.188 1.205
21 C9 C C9 N Y N 0 -2.363 -2.082 1.125
22 H4 H H4 N N N 0 0.681 3.416 -0.221
23 H3 H H3 N N N 0 2.492 1.776 -0.516
24 HN1 H HN1 N N N 0 2.043 -1.691 -0.987
25 H11A H 1H1 N N N 0 2.764 0.515 1.991
26 H12A H 2H1 N N N 0 3.037 -1.225 2.248
27 H13A H 3H1 N N N 0 4.406 -0.089 2.321
28 H6 H H6 N N N 0 -2.154 0.249 0.128
29 H13 H H13 N N N 0 -2.074 -1.394 -2.173
30 H12 H H12 N N N 0 -4.522 -1.595 -2.023
31 H11 H H11 N N N 0 -5.587 -2.102 0.137
32 H10 H H10 N N N 0 -4.207 -2.41 2.152
33 H9 H H9 N N N 0 -1.757 -2.218 2.009