Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NG1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P1 P P1 N N N 0 -0.326 -2.402 0.233
2 OP1 O OP1 N N N 0 -1.67 -2.509 -0.647
3 OP2 O OP2 N N N 0 -0.441 -3.376 1.51
4 OP3 O OP3 N N N 0 0.836 -2.804 -0.591
5 C1 C C1 R N N 0 0.083 -0.089 -0.437
6 C2 C C2 R N N 0 0.977 1.101 -0.081
7 C3 C C3 R N N 0 0.299 1.926 1.018
8 C4 C C4 R N N 0 -1.117 2.289 0.557
9 C5 C C5 R N N 0 -1.853 1.009 0.156
10 C6 C C6 N N N 0 -3.279 1.357 -0.276
11 C7 C C7 N N N 0 3.248 0.315 -0.481
12 C8 C C8 N N N 0 4.581 -0.186 0.013
13 N2 N N2 N N N 0 2.273 0.614 0.399
14 O1 O O1 N N N 0 -0.131 -0.884 0.732
15 O3 O O3 N N N 0 1.051 3.119 1.254
16 O4 O O4 N N N 0 -1.043 3.172 -0.564
17 O5 O O5 N N N 0 -1.172 0.379 -0.928
18 O6 O O6 N N N 0 -4.004 0.154 -0.54
19 O7 O O7 N N N 0 3.054 0.448 -1.671
20 HP1 H HP1 N N N 0 -2.401 -2.239 -0.074
21 HP2 H HP2 N N N 0 -0.557 -4.273 1.168
22 H1 H H1 N N N 0 0.568 -0.694 -1.203
23 H2 H H2 N N N 0 1.126 1.722 -0.965
24 H3 H H3 N N N 0 0.246 1.34 1.936
25 H4 H H4 N N N 0 -1.652 2.777 1.372
26 H5 H H5 N N N 0 -1.888 0.329 1.007
27 H61 H H61 N N N 0 -3.775 1.912 0.52
28 H62 H H62 N N N 0 -3.247 1.967 -1.179
29 H81 H H81 N N N 0 5.246 0.66 0.185
30 H82 H H82 N N N 0 4.441 -0.733 0.946
31 H83 H H83 N N N 0 5.02 -0.848 -0.734
32 HN2 H HN2 N N N 0 2.428 0.507 1.35
33 HO3 H HO3 N N Y 0 0.59 3.606 1.951
34 HO4 H HO4 N N Y 0 -1.953 3.374 -0.821
35 HO6 H HO6 N N Y 0 -4.895 0.418 -0.808